Results for "Viewer"

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  • CGView - Circular Genome Viewer

    GView is a Java package used to display and navigate bacterial genomes. GView is useful for producing high-quality genome maps for use in publications and websites, or as a visualization tool in a sequence annotation pipeline. Users can interact with the genome using a powerful pan-and-zoom inter...

    Tags: Bioinformatics, CGView, Circular, Genome, Viewer

    309 days ago

  • BLAST Ring Image Generator (BRIG)

    BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The application is available at: http://sourceforge.net/projects/brig If you have any questions or comments, post t...

    Tags: Bioinformatics, BLAST, Circular, Genome, Viewer, Ring

    298 days ago

  • DECIPHER

    DECIPHER is a software toolset that can be used to maintain, analyze, and decipher large amounts of DNA sequence data. To install DECIPHER, see the Downloads page. To begin using DECIPHER read the "Getting Started DECIPHERing" tutorial. Refer to the PDF documents below for instructions on how to ...

    Tags: Bioinformatics, DECIPHER, Genome, Viewer, Analyse

    298 days ago

  • Strudel

    Strudel is our graphical tool for visualizing genetic and physical maps of genomes for comparative purposes. The application aims to let the user examine their data at a variety of different levels of resolution, from entire maps to individual markers, and explore syntenic relationships between g...

    Tags: Bioinformatics, Strudel, View, Synteny, Genome, Viewer, Comaparative genomics

    298 days ago

  • Murasaki

    Murasaki is an anchor alignment program that is exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 35 wall minutes), or 8 mammals in 21 CPU hours (42 wall minutes)) scalable (Arbitrarily parallelizable across multiple nodes using MPI) memory efficient. (Even a singl...

    Tags: Bioinformatics, Musrsaki, Plot, Synteny, Genome, Viewer, Comparative genomics

    298 days ago

  • GenomeRing: alignment visualization based on SuperGenome coordinates

    The number of completely sequenced genomes is continuously rising, allowing for comparative analyses of genomic variation. Such analyses are often based on whole-genome alignments to elucidate structural differences arising from insertions, deletions or from rearrangement events. Computational to...

    Tags: Bioinformatics, Plot, Synteny, Genome, Viewer, Comparative genomics

    188 days ago