Results for "blast"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...eate images to show the relationship between genetic maps and large sequences (scaffolds, chromosomes, BACs, etc.). Based on tab – delimited BLAST results and some formulas, a...2601 days ago
Basic command-line to run BLAST
...programming language and NCBI BLAST+. Get Data Grab some da...> cow.small.faa BLAST Now we can blast these two c...-version] Now we can run the blast job. We will use blastp, whic...RIPTION Nucleotide-Nucleotide BLAST 2.7.0+...2235 days ago
Popular bioinformatics educational resources !
...tational biology. Geospiza.com/education/ Instructional materials for teaching bioinformatics. These include animated tutorials on topicssuch as BLAST, finding mutations in a prote...2183 days ago
Installing Bandage on Ubunty !
...✗ cd Bandage ➜ Bandage git:(master) lsBandage.pro BandageTests.pro blast build_scripts command_line CO...outdialog.ui -o ui_aboutdialog.h/home/urbe/anaconda3/bin/uic ui/enteroneblastquerydialog.ui -o ui_enteroneb...2180 days ago
Ancient whole genome duplication (WGD) detection tools !
...ftware. wgd depends on the following software BLASTMCLMUSCLE/MAFFT/PRANKPAMLPhyML...ith bioconda conda create -n wgd python=3.5 blast mcl muscle mafft prank paml f...ads 80 Sspon_cds.out/Sspon.v20190103.cds.fasta.blast.tsv.mcl Sspon.v20190103.cds.f...1146 days ago
Illumina based assembly pipeline steps !
...De novo assembly Primer trimming (Cutadapt; amplicon data only) Choice of multiple assembly tools (SPAdes || Unicycler || minia) Blast to reference genome (blastn) Contiguate assembly (ABACA...868 days ago
- ...compatibility of the database with your analysis pipeline and software tools. NCBI 16s RNA database location ftp://ftp.ncbi.nih.gov/blast/db/16SMicrobial.tar.gz...
2 days ago
