Results for "human cell atlas"
Bio-Scripts
Needleman-Wunsch Algorithm in Perl
#!/usr/bin/perl # USAGE: perl nw.pl HEAGAWGHEE PAWHEAE BLOSUM50.txt -8 # See: "Biological sequence anaysis" Durbin et al. ed. CUP 1998, Pg. 19 # Needleman...2897 days ago
- #!/usr/local/bin/perl -w # NOTE: YOU MUST CHANGE THE LINE ABOVE TO POINT TO # THE FULL PA...words of encountered in your sequence. This database is not human...
2685 days ago
Plot the density of genes in R
#column1 = chromosome name and column2 = start position of the gene # check if ggplot2 is installed, if so, load it, # if not, install and load it if("ggplot2" %...2276 days ago
Biological Sequence handling with Perl !
package Sequence::Generic; # File: Sequence/Generic.pm use strict; use Carp; use overl...eq() method"; } # Return the type of the sequence as a huma...sed = reverse $self->seq; return $reversed; } # A human...2173 days ago
Installing pb-assembly on Linux !
[jnarayan@hmem00 ~]$ module avail ------------------...libreadline/7.0-GCCcore-6.4.0 ATLAS/3.8.4-gompi-1.1.0-no-OFED-LAP...ScaLAPACK/1.8.0-gompi-1.1.0-no-OFED-ATLAS-3.8.4-LAPACK-3.4.0-BLACS-1.1...2026 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP-Pro-3335-MT:~/Downloads/auto...ve genomics. Comparison of the fruit fly genome with the huma...of genes. Researchers have also found that two-thirds of human...1503 days ago
Parse the NCBI taxonomy database with Perl !
use Bio::DB::Taxonomy; use warnings; my $sps="human"; # Get one from a NCBI taxonomy database my $db...>ancestor($nam); print "$ancestor_taxon->id ****"; #my $tree = $dbh->get_tree('human...1164 days ago
- #!/usr/bin/env Rscript library(RCircos) # usage: Rscript make_circos.r # parse args args = commandArgs(trailingOnly=TRUE) sv.file
291 days ago
