Results for "rapid"
Blogs
List of gene ontology software and tools
...DAVID : Gene Functional Classification (Laboratory of Immunopathogenesis and Bioinformatics, NIAID) The Functional Classification Tool provides a rapid means to organize large lists...3701 days ago
Computer simulation of genetic mechanism !!
...Study Designs http://www.rannala.org/?page_id=241 GENOME A rapid coalescent-based whole genome...s. https://sourceforge.net/projects/gensim/ GWAsimulator A rapid whole genome simulation progr...2966 days ago
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Bookmarks
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard softw...2921 days ago
- DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atypical proteins on a genome-wide basis. It works by selecting potential...
2865 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
... is a probabalistic framework for determining the likelihood of an assembly given the data (raw reads) used to assemble it. It allows for the rapid discovery of errors and compa...2677 days ago
Awesome perl frameworks, libraries and software - PART 4
...syntax for mojo epl templates in Mojo projects tseemann/prokka - Rapid prokaryotic genome annotation...vmware_esx - chech_vmware_esx Fork of check_vmware_api.pl vanstyn/RapidApp - Turnkey ajaxy webap...2485 days ago
Top-level pages
- ...genetic factors in health and disease, and to apply that understanding rapidly to prevention, diagnosis, a...logies it has spawned are already facilitating science is the extremely rapid sequencing by groups in Canad...
3933 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...Res 19(6):1068-76, 2009. Full Text Multiplexed shotgun genotyping for rapid and efficient genetic mapping...:610-7, 2011. Full Text Restriction-site Associated DNA (RAD) markers Rapid SNP discovery and genetic map...3770 days ago
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Wire posts
News
Accelerating Biology 2014:The Next Wave (18-22 February, 2014)
New advances in biology are being made at a rapidly increasing pace, largely due to new technologies and a...ng technology enables sequencing of hundreds of genomes at an extremely rapid rate and at a significantly l...3836 days ago
An Explosion Of Bioinformatics Careers
...ioinformatics and the identification, compilation, analysis, and visualization of huge amounts of biological and health care information. With the rapid development of new tools to m...3596 days ago
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Opportunity posts
2013 NextGen Genomics & Bioinformatics Technologies (NGBT) Conference, New Delhi, INDIA
...and disease. Also, this has made possible the growth of microbial, animal and plant genomics studies. While the data production has increased at a rapid pace challenges remain in ana...3914 days ago
Human Genome Meeting 2014, Geneva, Switzerland
The spectacular advances of the last few years resulted in the rapid analysis of the genome sequence of each individual. The biomedical world is now faced with the enormous challenge...3871 days ago
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Video
Genome + Epigenome = New Understanding of the Pathogens in Your Food
UC Davis's Bart Weimer describes foodborne pathogens and their proclivity for rapid genome rearrangement. The 100K Pathogen Genome Project he leads is using PacBio long-read sequenci...3864 days ago
Bio-Scripts
Script to rapid genome clustering based on pairwise ANI
First, create a blast+ database: makeblastdb -in -dbtype nucl -out Next, use megablast from blast+ package to perform all-vs-all blastn of sequences: blastn -quer...626 days ago
Groups
...ines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for b...3894 days ago
...riented programming. Python’s elegant syntax and dynamic typing, together with its interpreted nature, make it an ideal language for scripting and rapid application development in ma...3937 days ago
Tags
TARDIS: Toolkit for automated and rapid discovery of structural variants
tardis Toolkit for Automated and Rapid DIscovery of Structural variants Requirements zlib (http://www.zlib.net)mrfast (https://github.com/BilkentCompGen/mrfast)htslib (included as submodule; http://htslib.org/)Fetching tardis git clone https://github.com/BilkentCompGen/tardis.git --recursive ...Tags: TARDIS, Toolkit, automated, rapid, discovery, structural, variants
2513 days ago
- Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads. It is optimized for analysis of germline variation in small sets of individuals and somatic variation in tumor/normal sample pairs. Manta discovers, assembles and scores large-scale SVs, medium-sized indels ...
Tags: Manta, rapid, detection, structural, variants, indels, germline, cancer, sequencing, applications
2160 days ago
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Comments
Comment on "Installing Porechop on Ubuntu !"
...ta1,634,477 reads loaded Looking for known adapter sets10,000 / 10,000 (100.0%) Best read Best start read end Set %ID %ID SQK-NSK007 96.6 81.8 Rapid 66.1 0.0 SQK-MAP006 80.0 82.6...2097 days ago
- ...s possible from FastQfiles, BAM or SAM format. This tool provides an overview to inform about problematic areas, summary graphs and tables to rapid assessment of data. Results a...
2128 days ago
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