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Latest activity

• • Jit@jit.aber

  

  Jit commented on a bookmark Coronavirus Resources ! 1669 days ago

  Range of SARS-CoV-2 and SARS-CoV data for drug target identification and prioritisation. https://www.covid19dataportal.org/targets?db=complex-portal
• • Jit@jit.aber

  

  Jit commented on a bookmark Coronavirus Resources ! 1669 days ago

  Curated range of SARS-CoV-2 compound activity data.https://www.covid19dataportal.org/compounds?db=chembl-document
• • Jit@jit.aber

  

  Jit commented on a bookmark Coronavirus Resources ! 1669 days ago

  Curated functional and classification data on the SARS-CoV-2 protein entries and associated protein receptors. https://www.covid19dataportal.org/proteins?db=uniprot-covid19
• • Jit@jit.aber

  

  Jit commented on a bookmark Coronavirus Resources ! 1669 days ago

  SARS-CoV-2 protein structures, highlighting important structural features to support the development of treatments and vaccines. https://www.covid19dataportal.org/structures?db=structures
• • Jit@jit.aber

  

  Jit commented on a bookmark Coronavirus Resources ! 1669 days ago

  Raw and assembled sequences related to the COVID-19 outbreak, including outbreak isolates and records relating to coronavirus biology. Includes extensive sampling information. https://www.covid19dataportal.org/sequences?db=embl
• • Jit@jit.aber

  

  Jit commented on a bookmark Coronavirus Resources ! 1669 days ago

  Corona virus data resources https://www.covid19dataportal.org/
• • Neel@neelam

  

  Neel commented on the blog Tools to detect synteny blocks regions among multiple genomes 1671 days ago

  Synteny based tool to arrange contigs "r2cat: synteny plots and comparative assembly" http://bibiserv.techfak.uni-bielefeld.de/r2cat https://academic.oup.com/bioinformatics/article/26/4/570/243369
• • Jit@jit.aber

  

  Jit bookmarked StringTie Transcript assembly and quantification for RNA-Seq 1672 days ago

  StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional de novo assembly step to assemble and quantitate full-length...

  https://ccb.jhu.edu/software/stringtie/
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted to the wire 1672 days ago

  Long-read human genome sequencing and its applications https://www.nature.com/articles/s41576-020-0236-x #LongReads #Sequencing #Genome #Review
• • Jit@jit.aber

  

  Jit bookmarked Merqury: reference-free quality and phasing assessment for genome assemblies 1675 days ago

  Often, genome assembly projects have illumina whole genome sequencing reads available for the assembled individual. The k-mer spectrum of this read set can be used for independently evaluating assembly quality without the need of a high quality...

  https://github.com/marbl/merqury
• • Jit@jit.aber

  

  Jit commented on the blog Tools to detect synteny blocks regions among multiple genomes 1676 days ago

  halSynteny is the latest input in computational synteny  halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome...
• • Poonam Mahapatra@poonam

  

  Poonam Mahapatra bookmarked HNADOCK: a nucleic acid docking server for modeling RNA/DNA–RNA/DNA 3D complex structures 1676 days ago

  The HNADOCK server is to predict the binding complex structure between two nucleic acid molecules through a hierarchical docking algorihtm of an FFT-based global search strategy and an intrinsic scoring function for nucleic acid interactions. Users...

  http://huanglab.phys.hust.edu.cn/hnadock/
• • Neel@neelam

  

  Neel posted to the wire 1677 days ago

  Application of Support Vector Machines in Bioinformatics https://www.csie.ntu.edu.tw/~p88012/Bio_SVM.pdf #Bioinformatics #Application #SVM
• • Jit@jit.aber

  

  Jit bookmarked ShinyGO v0.61: Gene Ontology Enrichment Analysis + more 1678 days ago

  2/3/2020: Now published by Bioinformatics. 11/3/2019: V 0.61, Improve graphical visualization (thanks to reviewers). Interactive networks and much more. 5/20/2019: V.0.60, Annotation database updated to Ensembl 96. New bacterial and fungal...

  http://bioinformatics.sdstate.edu/go/
• • biogeek@biogeek

  

  biogeek commented on a page titled Learning Python Programming - a bioinformatician perspective ! 1678 days ago

  Python for Biologist http://userpages.fu-berlin.de/digga/p4b.pdf
• • BioStar@biostar

  

  BioStar bookmarked gggenes: a ggplot2 extension for drawing gene arrow maps. 1679 days ago

  Install the stable version of gggenes from CRAN: install.packages("gggenes") If you want the development version, install it from GitHub: devtools::install_github("wilkox/gggenes") More at https://github.com/wilkox/gggenes

  http://wilkox.org/gggenes
• • Jitendra Narayan@admin

  

  Jitendra Narayan is now a friend with Pallavi 1680 days ago

  • Jitendra Narayan@admin

  

  • Pallavi@pallavi

  
• • Pallavi@pallavi

  

  Pallavi is now a friend with Jitendra Narayan 1680 days ago

  • Pallavi@pallavi

  

  • Jitendra Narayan@admin

  
• • Jit@jit.aber

  

  Jit published a blog post Useful links to therapy, disease, drug and drug-target network data: 1680 days ago

  Useful resources to therapy, disease, drug and drug-target network data
• • BioStar@biostar

  

  BioStar commented on the blog Important Journals, Blogs and Forums for Bioinformaticians 1680 days ago

  Journal of Theoretical Biology also accept computational papers  https://www.journals.elsevier.com/journal-of-theoretical-biology

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