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• • Jit@jit.aber

  

  Jit posted to the wire 2052 days ago

  What is Comparative Genomics? https://www.news-medical.net/life-sciences/What-is-Comparative-Genomics.aspx #Comparative #Genomics
• • BioStar@biostar

  

  BioStar posted to the wire 2053 days ago

  Bioinformatics internship https://internshala.com/internship/detail/bioinformatics-internship-in-bangalore-at-bayeslabs1559038161 #Bioinformatics #Internship #Bangalore #bayeslabs
• • Nadia Baig@Nadia

  

  Nadia Baig commented on an answer to a question 2053 days ago

  fastq-dump --split-spot path/to/local/file/SRR649944.sra
• • Neel@neelam

  

  Neel commented on an answer to a question 2053 days ago

  I always prefer EBI: This way is better than fastq-dump. EBI has fastq files to squarely download and use. got to EBI http://www.ebi.ac.uk/ena/data/view/SRR121576 replace SRR121576 with your id name.  By the way , did you...
• • Archana Malhotra@archana

  

  Archana Malhotra answered the question How to install LoRDEC? 2053 days ago

  Try HECIL, a new long read correction tool. https://github.com/NDBL/HECIL
• • Neel@neelam

  

  Neel commented on an answer to a question 2053 days ago

  I always prefer EBI: This way is better than fastq-dump. EBI has fastq files to squarely download and use. got to EBI http://www.ebi.ac.uk/ena/data/view/SRR121576 replace SRR121576 with your id name.  By the way , did you...
• • Nadia Baig@Nadia

  

  Nadia Baig answered the question How to install LoRDEC? 2053 days ago

  Thanks neelam. To install HALC both BLASR and Lordec are needed.
• • Neel@neelam

  

  Neel answered the question WHich method is best to convert pacBio reads in .sra format to .fastq format? 2053 days ago

  I always prefer EBI: This way is better than fastq-dump. EBI has fastq files to squarely download and use. got to EBI http://www.ebi.ac.uk/ena/data/view/SRR121576 replace SRR121576 with your id name.  By the way , did you...
• • Neel@neelam

  

  Neel answered the question How to install LoRDEC? 2053 days ago

  It is certainly off topic, but HALC is the best choice for correction of long PacBio reads, when both, read size and quality, are the main focus of the analysis. Lordec is not very useful and surprisingly...
• • Nadia Baig@Nadia

  

  Nadia Baig answered the question WHich method is best to convert pacBio reads in .sra format to .fastq format? 2055 days ago

  fastq-dump --split-spot path/to/local/file/SRR649944.sra
• • Rahul Nayak@rahul

  

  Rahul Nayak answered the question WHich method is best to convert pacBio reads in .sra format to .fastq format? 2055 days ago

  Can you please share your command used ?
• • Rahul Nayak@rahul

  

  Rahul Nayak commented on an answer to a question 2056 days ago

  You might need to install libboost (I presume you are using Ubuntu) sudo apt-get install libboost-dev
• • Nadia Baig@Nadia

  

  Nadia Baig asked WHich method is best to convert pacBio reads in .sra format to .fastq format? 2056 days ago

  i am using fastq dump to convert sra files into fastq. In case of fastq this tool gives me a message on terminal "Ignoring --- number of reads as the spot length is less than 1"). if my sra file is of 6GBs, i always get fastq file less than the...
• • Jit@jit.aber

  

  Jit commented on an answer to a question 2056 days ago

  You can try this script https://github.com/jnarayan81/BioScripts/blob/master/runMapper.sh to map long reads.
• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh is now a friend with Nadia Baig 2056 days ago

  • Abhimanyu Singh@abhimanyu

  

  • Nadia Baig@Nadia

  
• • Nadia Baig@Nadia

  

  Nadia Baig is now a friend with Abhimanyu Singh 2056 days ago

  • Nadia Baig@Nadia

  

  • Abhimanyu Singh@abhimanyu

  
• • Jit@jit.aber

  

  Jit commented on an answer to a question 2057 days ago

  You can try this script https://github.com/jnarayan81/BioScripts/blob/master/runMapper.sh to map long reads.
• • Rahul Nayak@rahul

  

  Rahul Nayak answered the question How to install LoRDEC? 2057 days ago

  You might need to install libboost (I presume you are using Ubuntu) sudo apt-get install libboost-dev
• • Nadia Baig@Nadia

  

  Nadia Baig commented on the question How to install LoRDEC? 2057 days ago

  Hi! I want to install LoRDEC using the following tutorial (https://biosphere.france-bioinformatique.fr/wikia2/index.php/Lordec). I am not able to install it in my linux system. Actually the 4th point of this installation tutorial is quite...
• • Nadia Baig@Nadia

  

  Nadia Baig asked How to install LoRDEC? 2057 days ago

  Hi! I want to install LoRDEC using the following tutorial (https://biosphere.france-bioinformatique.fr/wikia2/index.php/Lordec). I am not able to install it in my linux system. Actually the 4th point of this installation tutorial is quite...

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