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- BioStar@biostar
BioStar commented on a page titled Read Simulators 615 days ago

There are several tools available for short read simulators that are widely used in bioinformatics research. Here are some of them: ART: The ART (short for Artificial Read Simulator) is a popular tool for generating synthetic reads based on...
- BioStar@biostar
BioStar commented on the blog How to install Perl modules manually, using CPAN command, and other quick ways in the group Perl *PIPERs 616 days ago

If using conda conda create --name perlENV perlconda activate perlENV conda install -c bioconda perl-bundle-bioperl conda install -c bioconda perl-bioperl
- BioStar@biostar
BioStar commented on the blog How to install Perl modules manually, using CPAN command, and other quick ways in the group Perl *PIPERs 616 days ago

Installing in CONDA env You can check using which perl - it should give you the perl that's located within your conda environment. In this case, it should install things into your conda-directory. When you install packages via cpan...
- BioStar@biostar
BioStar published a blog post Free Books on Machine Learning and Artificial Intelligent ! 616 days ago

Free AI/ML Books
- BioStar@biostar
BioStar created a new bio-script R script to covert and export html page to png 618 days ago
- BioStar@biostar
BioStar commented on the blog Calculate the significance of the difference between two trends 618 days ago

Useful reading material https://statsandr.com/blog/anova-in-r/
- BioStar@biostar
BioStar published a blog post Calculate the significance of the difference between two trends 618 days ago

To calculate the significance of the difference between two trends, you can use a statistical test such as a t-test or ANOVA (analysis of variance).
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- BioStar@biostar
  
  BioStar 618 days ago
  Useful reading material https://statsandr.com/blog/anova-in-r/
- BioStar@biostar
BioStar bookmarked Bioinformatics Chat ! 619 days ago

The bioinformatics chat is a podcast about computational biology, bioinformatics, and next generation sequencing. The bioinformatics chat is produced by Roman Cheplyaka and hosted by Roman and Jacob Schreiber.

https://bioinformatics.chat/
- BioStar@biostar
BioStar bookmarked Orange: Data mining 619 days ago

Open source machine learning and data visualization. Build data analysis workflows visually, with a large, diverse toolbox.

https://orangedatamining.com/
- LEGE@lege
LEGE commented on a page titled Short-read assembly using Spades ! 621 days ago

SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assemble reads generated from Illumina, IonTorrent, PacBio, and Oxford Nanopore sequencing platforms. Here is a brief overview of how to use SPAdes for...
- LEGE@lege
LEGE commented on the blog Tools for Sequence translation ! 621 days ago

Sequence translation is the process of converting a DNA or RNA sequence into its corresponding protein sequence. This is an important step in the analysis of genomic and transcriptomic data. There are several tools available for sequence...
- LEGE@lege
LEGE commented on the blog Tools for Differential expression analysis 621 days ago

Differential expression analysis is a widely used technique in genomics and transcriptomics research that allows researchers to identify genes that are differentially expressed between two or more conditions or groups. There are several tools...
- LEGE@lege
LEGE commented on the blog Tools for RNA classification 621 days ago

There are several tools available for RNA classification, each with its own strengths and limitations. Here are some commonly used tools: Infernal: Infernal is a popular tool for RNA classification that uses a covariance model approach to...
- LEGE@lege
LEGE commented on the blog Basic command-line to run BLAST 621 days ago

BLAST compares a query sequence to a database of known sequences and identifies the most similar matches. This is useful for identifying the function of a newly discovered gene or for understanding the evolutionary relationships between different...
- BioStar@biostar
BioStar commented on the blog How to install Perl modules manually, using CPAN command, and other quick ways in the group Perl *PIPERs 622 days ago

To install BioPerl on a macOS system, you can follow these steps: Open the Terminal app on your macOS system. Install Homebrew if you haven't already installed it by entering the following command: /bin/bash -c "$(curl -fsSL...
- BioStar@biostar
BioStar commented on a bookmark Perl Module Installation 622 days ago

To install BioPerl on a macOS system, you can follow these steps: Open the Terminal app on your macOS system. Install Homebrew if you haven't already installed it by entering the following command: /bin/bash -c "$(curl -fsSL...
- BioStar@biostar
BioStar created a page Type of SSR 623 days ago

Types of SSRs (simple sequence repeats), SSRs are short DNA sequences consisting of a tandem repeat of a few nucleotides, typically 2-6 nucleotides in length. There are different types of SSRs based on the length and pattern of the repeated...
- BioStar@biostar
BioStar published a blog post Steps to find palindrome in genomes ! 623 days ago

Palindromes are sequences of nucleotides that read the same backward as forward.
- BioStar@biostar
BioStar commented on the blog Tools to detect synteny blocks regions among multiple genomes 623 days ago

Genome synteny analysis is the comparison of the genomic structure and gene content of two or more related species. Here are some general steps to follow for conducting a genome synteny analysis: Choose the species: Select the species that you want...
- BioStar@biostar
BioStar commented on the blog Basic command-line to run BLAST 623 days ago

Following steps need to followed while doing any homology search. BLAST (Basic Local Alignment Search Tool) is a widely used program for searching a database of sequences to find those that match a query sequence. Here are...

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