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Latest activity

- LEGE@lege
LEGE created a new bio-script Perl script to parse blast results and plot basic stats ! 863 days ago
- LEGE@lege
LEGE created a new bio-script Perl script to parse VCF file ! 863 days ago
- LEGE@lege
LEGE created a new bio-script Perl script to find overlaps between two bed files ! 863 days ago
- LEGE@lege
LEGE created a new bio-script Raku script to find overlaps between two bed files ! 863 days ago
- LEGE@lege
LEGE created a new bio-script Raku script to find microsatellites in DNA fragments ! 863 days ago
- LEGE@lege
LEGE created a new bio-script Python script to find repeats in the DNA sequence ! 863 days ago
- LEGE@lege
LEGE created a new bio-script Raku script to find repeats in sequences ! 863 days ago
- LEGE@lege
LEGE created a new bio-script Python script for six frame translation of sequences ! 863 days ago
- LEGE@lege
LEGE created a new bio-script Perl script for six frame translation ! 863 days ago
- LEGE@lege
LEGE created a new bio-script Perl and BioPerl script to extract protein sequences using GFF file ! 863 days ago
- LEGE@lege
LEGE created a new bio-script Python script to extract a protein sequence from a genome using a General Feature Format (GFF) file... 863 days ago
- LEGE@lege
LEGE created a new bio-script Bash script to calculate difference between column ! 863 days ago
- LEGE@lege
LEGE bookmarked PPanGGOLiN: Depicting microbial species diversity via a Partitioned PanGenome Graph Of Linked... 863 days ago

PPanGGOLiN (Gautreau et al. 2020) is a software suite used to create and manipulate prokaryotic pangenomes from a set of either genomic DNA sequences or provided genome annotations. It is designed to scale up to tens of thousands of genomes. It...

https://github.com/labgem/PPanGGOLiN
- BioStar@biostar
BioStar posted to the wire 864 days ago

#Multi-line fasta to #Single-line Fasta $ awk '/^>/ {if (NR>1) print ""; printf("%s\n", $0); next; } { printf("%s", $0) } END { printf("\n"); }' multi_line.fasta > single_line.fasta
- BioStar@biostar
BioStar created a new bio-script Bash script to convert Multi-line Fasta to Single-line Fasta ! 864 days ago
- BioStar@biostar
BioStar created a new bio-script Perl script to convert Multi-line Fasta to Single-line Fasta ! 864 days ago
- BioStar@biostar
BioStar created a new bio-script Python script to convert Multi-line Fasta to Single-line Fasta 864 days ago
- BioStar@biostar
BioStar created a new bio-script Perl script to calculate GC content ! 865 days ago
- BioStar@biostar
BioStar posted to the wire 873 days ago

Delete all the headers from multifasta file $ awk 'BEGIN {print ">"ARGV[1]};!/^>/{print}' test.fa #fasta #delete #header #multifasta
- BioStar@biostar
BioStar posted to the wire 877 days ago

Data resource for metagenomics benchmarking https://ftp.ebi.ac.uk/pub/databases/metagenomics/taxon_benchmarking/ #Tools #Metagenome