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• • Jit@jit.aber

  

  Jit created a new bio-script Blast short sequences ! 792 days ago
• • Abhi@abhinav

  

  Abhi bookmarked gfastats: The swiss army knife for genome assembly. 805 days ago

  gfastats is a single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation. gfastats also allows seamless fasta<>fastq<>gfa[.gz]...

  https://github.com/vgl-hub/gfastats
• • Abhi@abhinav

  

  Abhi commented on a page titled Elgg Installation steps ! 806 days ago

  Useful for debugging  https://stackoverflow.com/questions/43094726/your-password-does-not-satisfy-the-current-policy-requirements https://elgg.org/discussion/view/1945994/elgg-requires-the-php-extension-gd
• • Abhi@abhinav

  

  Abhi created a page Elgg Installation steps ! 806 days ago

  Elgg is an open source social networking engine that allows the creation of social environments such as campus social networks and internal collaborative platforms for organizations. Elgg offers a number of social networking features including...

  Comments

  • • Abhi@abhinav

    

    Abhi 806 days ago

    Useful for debugging 

    https://stackoverflow.com/questions/43094726/your-password-does-not-satisfy-the-current-policy-requirements

    https://elgg.org/discussion/view/1945994/elgg-requires-the-php-extension-gd

  • • BioStar@biostar

    

    BioStar 625 days ago

    If you need to uninstall all MySQL packages 

    sudo apt-get remove --purge mysql*
    sudo apt-get autoremove
    sudo apt-get autoclean
• • Abhi@abhinav

  

  Abhi bookmarked Elastic BLAST ! 807 days ago

  ElasticBLAST is a new way to BLAST large numbers of queries, faster and on the cloud. Here are the top three reasons you should use ElasticBLAST: 1. ElasticBLAST can handle much LARGER queries!  ElasticBLAST can search query...

  https://blast.ncbi.nlm.nih.gov/doc/elastic-blast/
• • Abhi@abhinav

  

  Abhi created a new bio-script Genome Scaffolding and gap filling ! 820 days ago
• • Neel@neelam

  

  Neel commented on the blog Basic command-line to run BLAST 821 days ago

  Detail tutorial here https://www.ncbi.nlm.nih.gov/books/NBK279684/
• • Neel@neelam

  

  Neel bookmarked Bioinformatics Tutorial ! 821 days ago

  This site aims to be a useful resource for bioinformatics beginners. Feel free to jump right in with the section most relevant to you, and if you're not sure, then the place to start is definitely Unix

  https://astrobiomike.github.io/
• • Neel@neelam

  

  Neel published a blog post Langya Virus Update ! 832 days ago

  Virus
• • Neel@neelam

  

  Neel posted to the wire 834 days ago

  Genbank2GFF https://github.com/bioperl/bioperl-live/blob/master/bin/bp_genbank2gff3 #Genbank #GFF
• • Neel@neelam

  

  Neel created a new bio-script Script to rapid genome clustering based on pairwise ANI 835 days ago
• • Neel@neelam

  

  Neel commented on the bio-script Conda command to install checkV 835 days ago

  More at https://bitbucket.org/berkeleylab/checkv/src/master/
• • Neel@neelam

  

  Neel created a new bio-script Conda command to install checkV 835 days ago

  Comments

  • • Neel@neelam

    

    Neel 835 days ago

    More at https://bitbucket.org/berkeleylab/checkv/src/master/
• • Neel@neelam

  

  Neel commented on a bookmark CheckM:Assessing the quality of microbial genomes recovered from isolates, single cells, and... 835 days ago

  MOre at https://bitbucket.org/berkeleylab/checkv/src/master/
• • Neel@neelam

  

  Neel commented on a bookmark CheckM:Assessing the quality of microbial genomes recovered from isolates, single cells, and... 836 days ago

  CheckM for Metagenome https://linsalrob.github.io/ComputationalGenomicsManual/CheckM/
• • Jit@jit.aber

  

  Jit posted a new ad in the Opportunity Bioinformaticians in comparative and evolutionary genomics 842 days ago
• • Jit@jit.aber

  

  Jit bookmarked auN: a new metric to measure assembly contiguity 842 days ago

  Given a de novo assembly, we often measure the “average” contig length by N50. N50 is neither the real average nor median. It is the length of the contig such that this and longer contigs cover at least 50% of the assembly. A...

  https://lh3.github.io/2020/04/08/a-new-metric-on-assembly-contiguity
• • Neel@neelam

  

  Neel commented on the blog How to install Perl modules manually, using CPAN command, and other quick ways in the group Perl *PIPERs 845 days ago

  If you are on Ubuntu https://packages.ubuntu.com/bionic/bioperl sudo apt-get install <name_mentioned_in_list>
• • Jit@jit.aber

  

  Jit bookmarked Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome 849 days ago

  LOCUS ON563414 197205 bp DNA linear VRL 30-MAY-2022 DEFINITION Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome. ACCESSION ON563414 VERSION ON563414.3 KEYWORDS . SOURCE Monkeypox virus...

  https://www.ncbi.nlm.nih.gov/nuccore/ON563414
• • Jit@jit.aber

  

  Jit posted to the wire 857 days ago

  Linux command cheatsheet https://www.xmind.net/m/WwtB/#

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