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• • Neel@neelam

  

  Neel bookmarked Choosing the Right NGS Sequencing Instrument for Your Study 926 days ago

  The right sequencing instrument for your study depends on your project goal. Setting aside turnaround time and price, it essentially comes down to the numbers of reads and read length you need for your experiment. Below, we've described and compared...

  https://genohub.com/ngs-instrument-guide/
• • Surabhi Chaudhary@surabhi

  

  Surabhi Chaudhary created a new bio-script Bash online to update Linux OS 926 days ago
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted a new ad in the Opportunity Immediate opening for senior and lead bioinformatics engineers at MedGenome 936 days ago
• • Shruti Paniwala@shruti

  

  Shruti Paniwala bookmarked Syri compares alignments between two chromosome-level assemblies and identifies synteny and... 940 days ago

  Syri compares alignments between two chromosome-level assemblies and identifies synteny and structural rearrangements.

  https://github.com/schneebergerlab/syri
• • Shruti Paniwala@shruti

  

  Shruti Paniwala created a new bio-script Rename the screen name in Linux ! 941 days ago
• • Rahul Nayak@rahul

  

  Rahul Nayak created a new bio-script Awk command to keep only short the fasta header ! 944 days ago
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted to the wire 944 days ago

  #HumanCellAtlas consortium present the #TabulaSapiens dataset. Provides a molecular definition of more than 400 cell types across 24 organs. Learn more: https://fcld.ly/9oala6q
• • Shruti Paniwala@shruti

  

  Shruti Paniwala bookmarked CrowdGO: Machine learning and semantic similarity guided consensus Gene Ontology annotation 946 days ago

  CrowdGO is a protein Gene Ontology predictor using a meta approach, analyzing the predictions of other tools in order to get an improved precision and recall. Please note that the CrowdGO snakemake workflow is currently only tested on Ubuntu. It...

  https://gitlab.com/mreijnders/crowdgo
• • Neel@neelam

  

  Neel commented on a page titled Installing ELGG on Ubuntu ! 947 days ago

  sudo apt-get -y --reinstall install phpmyadmin; sudo service apache2 restart;
• • Neel@neelam

  

  Neel commented on a bookmark Fix rewritable error of ELGG ! 947 days ago

  sudo systemctl restart apache2   Now, create an .htaccess file in the web root. sudo nano /var/www/html/.htaccess   Add this line at the top of the new file to activate the rewrite...
• • Neel@neelam

  

  Neel published a blog post Installing ELGG on Ubuntu ! 947 days ago

  Elgg hosting on ubuntu server !
• • Neel@neelam

  

  Neel bookmarked Quip: Aggressive compression of FASTQ, SAM and BAM files. 947 days ago

  This will help us to reduce the amount of drive space we take up and decrease data transfer times Quip compresses next-generation sequencing data with extreme prejudice. It supports input and output in...

  https://github.com/dcjones/quip
• • Neel@neelam

  

  Neel created a new bio-script Bash command to remove /r 952 days ago
• • Neel@neelam

  

  Neel bookmarked GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations 952 days ago

  The GenomeQC web application is implemented in R/Shiny version 1.5.9 and Python 3.6 and is freely available at https://genomeqc.maizegdb.org/ under the GPL license. All source code and a containerized version of the GenomeQC pipeline is...

  https://github.com/HuffordLab/GenomeQC
• • Neel@neelam

  

  Neel created a new bio-script Command line to move all files from a directory ! 953 days ago
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked Snakemake Tutorials ! 962 days ago

  A lesson introducing the Snakemake workflow system for bioinformatics analysis. Prerequisites This is an intermediate lesson and assumes learners have already done some bioinformatics: Familiarity with the BASH command shell, including...

  https://carpentries-incubator.github.io/snakemake-novice-bioinformatics/aio/index.html
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer... 974 days ago

  MUM&Co is able to detect:Deletions, insertions, tandem duplications and tandem contractions (>=50bp & <=150kb)Inversions (>=1kb) and translocations (>=10kb)

  https://github.com/SAMtoBAM/MUMandCo
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index 980 days ago

  PuffAligner, a fast, accurate and versatile aligner built on top of the Pufferfish index. PuffAligner is able to produce highly sensitive alignments, similar to those of Bowtie2, but much more quickly. While exhibiting similar speed to the ultrafast...

  https://github.com/COMBINE-lab/pufferfish/tree/cigar-strings
• • Neel@neelam

  

  Neel bookmarked Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation 998 days ago

  Merfin, a k-mer based variant-filtering algorithm for improved accuracy in genotyping and genome assembly polishing. Merfin evaluates each variant based on the expected k-mer multiplicity in the reads, independently of the quality of the...

  https://github.com/arangrhie/merfin
• • Neel@neelam

  

  Neel bookmarked R Shiny in Life Sciences – Top 7 Dashboard Examples 1000 days ago

   R Shiny is one of the easiest ways for developers to make production-ready dashboards when speed and functionality are crucial. Shiny is approachable with a lot of documentation available, and because of this, a lot of developers/researchers...

  https://www.r-bloggers.com/2022/03/r-shiny-in-life-sciences-top-7-dashboard-examples/

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