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• • vinay rajput@vinayrajput

  

  vinay rajput is now a friend with EagleEye 3608 days ago

  • vinay rajput@vinayrajput

  

  • EagleEye@santhilalsubhash

  
• • Jit@jit.aber

  

  Jit bookmarked PLINK2 3608 days ago

  This is a comprehensive update to Shaun Purcell's PLINK command-line program, developed by Christopher Chang with support from the NIH-NIDDK's Laboratory of Biological Modeling, the Purcell Lab at Mount Sinai...

  https://www.cog-genomics.org/plink2/
• • Jit@jit.aber

  

  Jit bookmarked IMPUTE2 3608 days ago

  IMPUTE2 is a computer program for phasing observed genotypes and imputing missing genotypes. Most people use just a couple of the program's basic functions, but we have also built up a collection of specialized and powerful options. If you are...

  https://mathgen.stats.ox.ac.uk/impute/impute_v2.html
• • Jit@jit.aber

  

  Jit is now a friend with vinay rajput 3608 days ago

  • Jit@jit.aber

  

  • vinay rajput@vinayrajput

  
• • vinay rajput@vinayrajput

  

  vinay rajput is now a friend with Jit 3608 days ago

  • vinay rajput@vinayrajput

  

  • Jit@jit.aber

  
• • Jit@jit.aber

  

  Jit bookmarked Beagle 3608 days ago

  Beagle is a software package that performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection. Beagle version 4.1 has a more accurate genotype phasing algorithm and a very fast and...

  http://faculty.washington.edu/browning/beagle/beagle.html
• • vinay rajput@vinayrajput

  

  vinay rajput has a new avatar 3608 days ago

  
• • vinay rajput@vinayrajput

  

  vinay rajput is now a friend with Jitendra Narayan 3608 days ago

  • vinay rajput@vinayrajput

  

  • Jitendra Narayan@admin

  
• • Jitendra Narayan@admin

  

  Jitendra Narayan is now a friend with vinay rajput 3608 days ago

  • Jitendra Narayan@admin

  

  • vinay rajput@vinayrajput

  
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted to the wire 3609 days ago

  Slice on the fly with perl: my ($username, $real_name) = (split /:/, $str)[0, 4]; #Perl #PerlTrick #Split
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted to the wire 3609 days ago

  Re-install perl in Ubuntu: sudo aptitude reinstall perl #Perl #Ubuntu #Install #Linux
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted to the wire 3609 days ago

  Extract a fasta sequence from multifasta file: samtools faidx multitest.fa and then samtools faidx multitest.fa fasta_id > out.fa #Samtools #Fasta #Extract #Multifasta
• • Jit@jit.aber

  

  Jit posted to the wire 3610 days ago

  List all kernels dpkg --get-selections | grep "linux-image-[[:digit:]].*" | tr "\t" ";" | cut -d ";" -f1 #Kernels #Linux #List
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted to the wire 3610 days ago

  Coverage R Plot http://davetang.org/muse/2013/09/07/creating-a-coverage-plot-in-r/ #R #Plot #Genome #Image #NGS #BAM
• • Arup Ghosh@arup

  

  Arup Ghosh posted a new ad in the Opportunity Admission to Ph.D. Programme (Winter Session), NISER, Bhubaneswar 3611 days ago
• • Arup Ghosh@arup

  

  Arup Ghosh published a news post SEQforum: A new discussion forum for Bioinformaticians 3611 days ago
• • Arup Ghosh@arup

  

  Arup Ghosh commented on the blog How to install Perl modules on Mac OS X in easy steps !! 3611 days ago

  Join SEQforum to share your programming and bioinformatics knowledge. http://seqforum.com/register.php
• • Jit@jit.aber

  

  Jit bookmarked GenomeScope: open-source web tool to rapidly estimate the overall characteristics of a genome,... 3614 days ago

  Summary: GenomeScope is an open-source web tool to rapidly estimate the overall characteristics of a genome, including genome size, heterozygosity rate, and repeat content from unprocessed short reads. These features are essential for studying...

  http://qb.cshl.edu/genomescope/
• • Jit@jit.aber

  

  Jit bookmarked Shinyheatmap 3614 days ago

  Background: Transcriptomics, metabolomics, metagenomics, and other various next-generation sequencing (-omics) fields are known for their production of large datasets. Visualizing such big data has posed technical challenges in biology, both in...

  http://shinyheatmap.com/
• • Jit@jit.aber

  

  Jit bookmarked Ribbon !! 3614 days ago

  Visualization has played an extremely important role in the current genomic revolution to inspect and understand variants, expression patterns, evolutionary changes, and a number of other relationships. However, most of the information in...

  http://genomeribbon.com/

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