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• • Jit@jit.aber

  

  Jit posted to the wire 3649 days ago

  Number of thread in Linux: echo $(( `ps axms | wc -l` - 1)) #Thread #Info #Linux
• • Radha Agarkar@radhaagarkar

  

  Radha Agarkar posted to the wire 3649 days ago

  Extract sequence by using Ids file (assuming one ids in a line): perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @ARGV' ids.file fasta.file #PerlTricks #PerlOneliner #Perl #Extract #Ids #
• • Radha Agarkar@radhaagarkar

  

  Radha Agarkar posted to the wire 3649 days ago

  Extract fasta sequence by Ids: perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file #Perl #PerlOneliner #PerlTrick #Extract #Ids #Fasta
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted to the wire 3650 days ago

  Rename the fasta name perl -ane 'if(/\>/){$a++; @foo = split /\s+/;$_ = join '_', @foo; print "$_\n"}else{print;}' your.fasta > new.fa #PerlTrick #PerlOneliner #Perl
• • Neel@neelam

  

  Neel answered the question Which are the best known web server for protein structure prediction? 3653 days ago

  My favourate server CASTp http://sts.bioe.uic.edu/castp/view/viewer2.php . Hope you gonna like it as well.
• • Poonam Mahapatra@poonam

  

  Poonam Mahapatra answered the question Which are the best known web server for protein structure prediction? 3653 days ago

  I-TASSER is the best server for protein structure prediction according to the 2006-2012 CASP experiments. The standalone I-TASSER package is freely available for download. You can also have a look at...
• • Tayyba Jadoon@tayybaazhar

  

  Tayyba Jadoon asked Which are the best known web server for protein structure prediction? 3655 days ago

  Anyone PhD here ?  I need help in protein structure prediction.
• • Manisha Sadana@Manixha

  

  Manisha Sadana is now a friend with Poonam Mahapatra 3655 days ago

  • Manisha Sadana@Manixha

  

  • Poonam Mahapatra@poonam

  
• • Poonam Mahapatra@poonam

  

  Poonam Mahapatra is now a friend with Manisha Sadana 3655 days ago

  • Poonam Mahapatra@poonam

  

  • Manisha Sadana@Manixha

  
• • Manisha Sadana@Manixha

  

  Manisha Sadana is now a friend with Nishi Singh 3655 days ago

  • Manisha Sadana@Manixha

  

  • Nishi Singh@nishi

  
• • Nishi Singh@nishi

  

  Nishi Singh is now a friend with Manisha Sadana 3655 days ago

  • Nishi Singh@nishi

  

  • Manisha Sadana@Manixha

  
• • Manisha Sadana@Manixha

  

  Manisha Sadana is now a friend with Amala Arumugam 3655 days ago

  • Manisha Sadana@Manixha

  

  • Amala Arumugam@Amala

  
• • Amala Arumugam@Amala

  

  Amala Arumugam is now a friend with Manisha Sadana 3655 days ago

  • Amala Arumugam@Amala

  

  • Manisha Sadana@Manixha

  
• • Manisha Sadana@Manixha

  

  Manisha Sadana is now a friend with Tayyba Jadoon 3655 days ago

  • Manisha Sadana@Manixha

  

  • Tayyba Jadoon@tayybaazhar

  
• • Tayyba Jadoon@tayybaazhar

  

  Tayyba Jadoon is now a friend with Manisha Sadana 3655 days ago

  • Tayyba Jadoon@tayybaazhar

  

  • Manisha Sadana@Manixha

  
• • Tayyba Jadoon@tayybaazhar

  

  Tayyba Jadoon has a new avatar 3655 days ago

  
• • Tayyba Jadoon@tayybaazhar

  

  Tayyba Jadoon is now a friend with Jitendra Narayan 3655 days ago

  • Tayyba Jadoon@tayybaazhar

  

  • Jitendra Narayan@admin

  
• • Jitendra Narayan@admin

  

  Jitendra Narayan is now a friend with Tayyba Jadoon 3655 days ago

  • Jitendra Narayan@admin

  

  • Tayyba Jadoon@tayybaazhar

  
• • Jit@jit.aber

  

  Jit posted to the wire 3656 days ago

  Understanding N50 http://jermdemo.blogspot.be/2008/11/calculating-n50-from-velvet-output.html #N50 #Assembly #Genome #Contigs
• • Jit@jit.aber

  

  Jit bookmarked FERMI 3656 days ago

  Fermi is a de novo assembler with a particular focus on assembling Illumina short sequence reads from a mammal-sized genome. In addition to the role of a typical assembler, fermi also aims to preserve heterozygotes which are...

  https://github.com/lh3/fermi

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