A Scalable and Accurate Targeted Gene Assembly Tool (SAT-Assembler) for Next-Generation Sequencing Datahttp://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003737
Software: http://sourceforge.net/projects/sat-assembler/
A...
Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. It's recommended for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy excels in the mapping of...
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to assist (amongst others) in quality control of de novo genome assembly or...
gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise...
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK can align reads generated by all the major sequencing technologies,...
RCircos package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processing and graphic manipulation pipelines for presenting large-scale multi-sample genomic research data. It...
Hmmm interesting, but I prefer Perl module String::Random;
use String::Random;my $pass = String::Random->new;print "Your password is ", $pass->randpattern("CCcc!ccn"), "\n";
This would output something like this:Your password is UDwp$tj5
MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling™ Data
MaGuS (Map-GUided Scaffolding) is a scaffolder and a reference-free evaluator of assembly quality. It uses a draft genome assembly, a...
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