There are several other softwares
Eland: http://illumina.ucr.edu/illumina_docs/Velvet:http://www.ebi.ac.uk/~zerbino/velvet/Maq (Mapping and Assembly with Quality): http://maq.sourceforge.net/maq-man.shtmlSOAP alignment tool:...
R package SPP for chip-seq analysis. It can read quite a few aligner's output file. Here is the original package tutorial. http://compbio.med.harvard.edu/Supplements/ChIP-seq/tutorial.htmlHere is my version of the...
Hi Radha,
Go for Linux. It's the first citizen for every C, C++, Python, Perl and Ruby Pipeline.
As for the Linux distribution, Try Gentto ( http://www.gentoo.org/ ) for best perfomance or BioLinux ( http://en.wikipedia.org/wiki/BioLinux ) for...
Hello Radha,
In the Bioinformatics Linux and Unix is recommended. because
Most of High performance Software for Bioinformatics can developed for Linux.
Linux is Faster then Windows because Windows can not able to use your Computer RAM...
I am currently working on NGS, and looking for a nice OS to handle huge amount of genomics data with an ease. Someone suggested me that Window OS will be a bad idea to use for NGS analysis. I need your valuable suggestion for the best.
Thanks