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• • Neel@neelam

  

  Neel bookmarked SeqCAT: Sequence Conversion and Analysis Toolbox 194 days ago

  Your all-in-one solution for smooth conversion of sequence coordinates. Designed for bioinformatics data analysis and daily laboratory work, SeqCAT simplifies sequence coordinate conversion. Extract gene and transcript information, manipulate...

  https://mtb.bioinf.med.uni-goettingen.de/SeqCAT/home
• • Abhi@abhinav

  

  Abhi created a new bio-script Python script to parse a FASTQ file ! 198 days ago
• • Abhi@abhinav

  

  Abhi created a new bio-script Python script to calculate basic genome stats ! 198 days ago
• • Abhi@abhinav

  

  Abhi created a new bio-script Python script to create fastq file with random sequences 198 days ago
• • Abhi@abhinav

  

  Abhi bookmarked Bactopia: a flexible pipeline for complete analysis of bacterial genomes 199 days ago

  Bactopia is a flexible pipeline for complete analysis of bacterial genomes. The goal of Bactopia is process your data with a broad set of tools, so that you can get to the fun part of analyses quicker! Bactopia was inspired by Staphopia, a...

  https://bactopia.github.io/latest/
• • Abhi@abhinav

  

  Abhi bookmarked MetaGraph: Ultra Scalable Framework for DNA Search, Alignment, Assembly 199 days ago

  The MetaGraph framework is designed to work with a wide range of input data sets, indexing from a few samples up to the contents of entire archives with hundreds of thousands of records. The indexing workflow always follows the same principle,...

  https://metagraph.ethz.ch/
• • Abhi@abhinav

  

  Abhi bookmarked Fundamentals of Data Visualization by Claus O. Wilke 199 days ago

  The book is meant as a guide to making visualizations that accurately reflect the data, tell a story, and look professional. It has grown out of my experience of working with students and postdocs in my laboratory on thousands of data...

  https://clauswilke.com/dataviz/
• • Abhi@abhinav

  

  Abhi bookmarked ULTRA (ULTRA Locates Tandemly Repetitive Areas) : Effective Labeling of Repetitive Genomic Sequence 199 days ago

  ULTRA is a tool to find and annotate tandem repeats inside genomic sequence. It is able to find repeats of any length and of any period (up to a maximum period of 4000). It can find highly decayed repeats missed by other software, and it will also...

  https://github.com/TravisWheelerLab/ULTRA
• • Abhi@abhinav

  

  Abhi commented on a bookmark LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data 199 days ago

  Detail paper here https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8111061/
• • Abhi@abhinav

  

  Abhi published a blog post Bioinformatic tools for pathogens informatics at CVR 199 days ago

  https://bioinformatics.cvr.ac.uk/software/
• • Abhi@abhinav

  

  Abhi bookmarked quarTeT: a telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat... 199 days ago

  quarTeT is a collection of tools for T2T genome assembly and basic analysis in automatic workflow.Task include: AssemblyMapper : reference-guided genome assembly GapFiller : long-reads based gap filling TeloExplorer : telomere...

  http://www.atcgn.com:8080/quarTeT/home.html
• • LEGE@lege

  

  LEGE posted to the wire 202 days ago

  #NCBI is planning to push some updated on #taxonomy #classification https://ncbiinsights.ncbi.nlm.nih.gov/2024/06/04/changes-ncbi-taxonomy-classifications/
• • LEGE@lege

  

  LEGE bookmarked AMR Database ! 204 days ago

  ARG-ANNOT. PMID: 24145532 CARD. PMID: 23650175 MEGARes PMID: 27899569 NCBI BioProject: PRJNA313047 plasmidfinder PMID: 24777092 resfinder. PMID: 22782487 VFDB. PMID: 26578559 SRST2's version...

  https://github.com/sanger-pathogens/ariba/wiki/Task%3A-getref
• • LEGE@lege

  

  LEGE bookmarked Seeing Theory and Learn 204 days ago

  Seeing Theory was created by Daniel Kunin while an undergraduate at Brown University. The goal of this website is to make statistics more accessible through interactive visualizations (designed using Mike Bostock’s JavaScript library D3.js).

  https://seeing-theory.brown.edu/
• • LEGE@lege

  

  LEGE bookmarked Powerful books for learning data analysis with R 211 days ago

  R is powerful tool for data analysis, visualization, and machine learning. And it costs $0 to use! Here are six FREE books you can use to learn R...

  https://r-graphics.org/
• • Abhi@abhinav

  

  Abhi bookmarked Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes 224 days ago

  Bactopia is a flexible pipeline for complete analysis of bacterial genomes. The goal of Bactopia is to process your data with a broad set of tools, so that you can get to the fun part of analyses quicker! Bactopia can be split into two main...

  https://github.com/bactopia/bactopia
• • Abhi@abhinav

  

  Abhi bookmarked The ATCC Genome Portal 224 days ago

  The ATCC Genome Portal (AGP, https://genomes.atcc.org/) is a database of authenticated genomes for bacteria, fungi, protists, and viruses held in ATCC’s biorepository. It now includes 3,938 assemblies (253% increase) produced under ISO...

  https://genomes.atcc.org/
• • LEGE@lege

  

  LEGE published a blog post Hypothesis testing ! 224 days ago

  What is a hypothesis test?
• • Abhi@abhinav

  

  Abhi posted to the wire 226 days ago

  Dengue Virus Genome https://www.ncbi.nlm.nih.gov/genomes/GenomesGroup.cgi?taxid=12637 #Dengue
• • LEGE@lege

  

  LEGE created a new bio-script Commands to create conda env 226 days ago

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