BOL

PPanGGOLiN (Gautreau et al. 2020) is a software suite used to create and manipulate prokaryotic pangenomes from a set of either genomic DNA sequences or provided genome annotations. It is designed to scale up to tens of thousands of genomes. It...

#Multi-line fasta to #Single-line Fasta $ awk '/^>/ {if (NR>1) print ""; printf("%s\n", $0); next; } { printf("%s", $0) } END { printf("\n"); }' multi_line.fasta > single_line.fasta

Delete all the headers from multifasta file $ awk 'BEGIN {print ">"ARGV[1]};!/^>/{print}' test.fa #fasta #delete #header #multifasta

Data resource for metagenomics benchmarking https://ftp.ebi.ac.uk/pub/databases/metagenomics/taxon_benchmarking/ #Tools #Metagenome

#Learning and understanding #ANOVA online https://sphweb.bumc.bu.edu/otlt/mph-modules/bs/bs704_hypothesistesting-anova/bs704_hypothesistesting-anova_print.html

Interesting online plots idea https://chart-studio.plotly.com/create/#/ #Plots #Idea #Shiny #Draw

Mummer alignment to circos plotting https://github.com/metagenlab/mummer2circos #Mummer #Circos #Plot #Draw #Circular

Understanding expression data https://www.reneshbedre.com/blog/expression_units.html #Expression #RNASeq #NGS

ReConPlot (REarrangement and COpy Number PLOT), an R package that provides functionalities for the joint visualization of SCNAs and SVs across one or multiple chromosomes. ReConPlot is based on the popular ggplot2 package, thus allowing...

Generate a #quick #monkeypox #alignment https://github.com/aineniamh/squirrel