BOL

PPanGGOLiN (Gautreau et al. 2020) is a software suite used to create and manipulate prokaryotic pangenomes from a set of either genomic DNA sequences or provided genome annotations. It is designed to scale up to tens of thousands of genomes. It...

#Multi-line fasta to #Single-line Fasta $ awk '/^>/ {if (NR>1) print ""; printf("%s\n", $0); next; } { printf("%s", $0) } END { printf("\n"); }' multi_line.fasta > single_line.fasta

Delete all the headers from multifasta file $ awk 'BEGIN {print ">"ARGV[1]};!/^>/{print}' test.fa #fasta #delete #header #multifasta

Data resource for metagenomics benchmarking https://ftp.ebi.ac.uk/pub/databases/metagenomics/taxon_benchmarking/ #Tools #Metagenome