BOL

Bioinformatics job at Naotia University https://drive.google.com/file/d/0B0Y1Fpxmzyd3OHQ3aUNYa3hZY2c/view?pref=2&pli=1 #Job #Neotia #Professor

List of popular bioinformatics educational resources

I recommend to have a look at this BOL  For De-novo Genome Assembly -- Canu. Flye and MARVEL sound promising.Alignment -- minimap2 and/or LAST, depending on the application. LAST is particularly good...

MARVEL consists of a set of tools that facilitate the overlapping, patching, correction and assembly of noisy (not so noisy ones as well) long reads. The assembly process can be summarized as follows: overlap patch reads overlap...

Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies. The algorithm uses an A-Bruijn graph to find the overlaps between reads and does not require them to be error-corrected. After...

http://animaldiversity.org/accounts/Rotifera/ #Rotifer #Introduction #Animal

Following methods can help to access the assembly correctness: Remove the contaminated reads, map the it. If many reads didn't aligned you probably miss some regions in your assembly. Use a reference genome, and if there are more than 2/MY...

ALPACA requires Celera Assembler 8.3 or later. It is recommended to build Celera Assembler from source. (Why? The pre-built binaries CA_8.3rc1 and CA8.3rc2 will work for any large data set.  Detail paper...

I am working on a metazoan genome. I wanted to try the best known method to validate the assembly structure. Your suggestions are welcome. 

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