BOL: All Site Activity

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- Abhi@abhinav
Abhi commented on a bookmark CovCal: Coverage / Read Count Calculator 818 days ago

Sequencing coverage is defined as the average number of reads that covers each base of the reference genome. Estimating the sequencing coverage is very important when you are simulating datasets. The coverage equation is defined as...
- Abhi@abhinav
Abhi bookmarked Covid Spectrum ! 822 days ago

https://cov-spectrum.org/explore/World/AllSamples/ CoV-Spectrum supports a wide range of search queries. The following sections presents search options of the basic search bar. For information on the advanced search

https://cov-spectrum.org/
- Abhi@abhinav
Abhi bookmarked Covid Spectrum ! 822 days ago

https://cov-spectrum.org/explore/World/AllSamples/ CoV-Spectrum supports a wide range of search queries. The following sections presents search options of the basic search bar. For information on the advanced search

https://cov-spectrum.org/
- Abhi@abhinav
Abhi bookmarked Covid Spectrum ! 822 days ago

https://cov-spectrum.org/explore/World/AllSamples/

https://cov-spectrum.org/
- Abhi@abhinav
Abhi bookmarked Executing Snakemake 822 days ago

This part of the documentation describes the snakemake executable. Snakemake is primarily a command-line tool, so the snakemake executable is the primary way to execute, debug, and visualize...

https://snakemake.readthedocs.io/en/v4.5.1/executable.html
- Abhi@abhinav
Abhi created a new bio-script Extract the mapped and unmapped reads ! 825 days ago
- Jit@jit.aber
Jit commented on a page titled Phylogenetic for Bioinformatics 825 days ago

Nice evolutionary distance caculation methods @ https://www.cs.rice.edu/~nakhleh/COMP571/Slides/Phylogenetics-DistanceMethods-Full.pdf
- Jit@jit.aber
Jit commented on a page titled Phylogenetic for Bioinformatics 826 days ago

Nice tutorial https://www.zoology.ubc.ca/~bio336/Bio336/Lectures/Lecture14/Overheads.html
- Jit@jit.aber
Jit created a new bio-script Blast short sequences ! 827 days ago
- Abhi@abhinav
Abhi bookmarked gfastats: The swiss army knife for genome assembly. 840 days ago

gfastats is a single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation. gfastats also allows seamless fasta<>fastq<>gfa[.gz]...

https://github.com/vgl-hub/gfastats
- Abhi@abhinav
Abhi commented on a page titled Elgg Installation steps ! 841 days ago

Useful for debugging https://stackoverflow.com/questions/43094726/your-password-does-not-satisfy-the-current-policy-requirements https://elgg.org/discussion/view/1945994/elgg-requires-the-php-extension-gd
- Abhi@abhinav
Abhi created a page Elgg Installation steps ! 841 days ago

Elgg is an open source social networking engine that allows the creation of social environments such as campus social networks and internal collaborative platforms for organizations. Elgg offers a number of social networking features including...
Comments
- Abhi@abhinav
  
  Abhi 841 days ago
  Useful for debugging
  https://stackoverflow.com/questions/43094726/your-password-does-not-satisfy-the-current-policy-requirements
  https://elgg.org/discussion/view/1945994/elgg-requires-the-php-extension-gd
- BioStar@biostar
  
  BioStar 660 days ago
  If you need to uninstall all MySQL packages
  sudo apt-get remove --purge mysql* sudo apt-get autoremove sudo apt-get autoclean
- Abhi@abhinav
Abhi bookmarked Elastic BLAST ! 841 days ago

ElasticBLAST is a new way to BLAST large numbers of queries, faster and on the cloud. Here are the top three reasons you should use ElasticBLAST: 1. ElasticBLAST can handle much LARGER queries! ElasticBLAST can search query...

https://blast.ncbi.nlm.nih.gov/doc/elastic-blast/
- Abhi@abhinav
Abhi created a new bio-script Genome Scaffolding and gap filling ! 855 days ago
- Neel@neelam
Neel commented on the blog Basic command-line to run BLAST 856 days ago

Detail tutorial here https://www.ncbi.nlm.nih.gov/books/NBK279684/
- Neel@neelam
Neel bookmarked Bioinformatics Tutorial ! 856 days ago

This site aims to be a useful resource for bioinformatics beginners. Feel free to jump right in with the section most relevant to you, and if you're not sure, then the place to start is definitely Unix

https://astrobiomike.github.io/
- Neel@neelam
Neel published a blog post Langya Virus Update ! 867 days ago

Virus
- Neel@neelam
Neel posted to the wire 869 days ago

Genbank2GFF https://github.com/bioperl/bioperl-live/blob/master/bin/bp_genbank2gff3 #Genbank #GFF
- Neel@neelam
Neel created a new bio-script Script to rapid genome clustering based on pairwise ANI 870 days ago
- Neel@neelam
Neel commented on the bio-script Conda command to install checkV 870 days ago

More at https://bitbucket.org/berkeleylab/checkv/src/master/

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