BOL

Synteny Portal, a versatile web-based application portal for constructing, visualizing and browsing synteny blocks. With Synteny Portal, users can easily (i) construct synteny blocks among multiple species by using prebuilt alignments in the UCSC...

Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file. Grinder can produce genomic, metagenomic, transcriptomic, metatranscriptomic,...

A new global alignment method called AVID. The method is designed to be fast, memory efficient, and practical for sequence alignments of large genomic regions up to megabases long. We present numerous applications of the method, ranging from the...

SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of contigs with known reference genomes and predicts scores and ranking for contigs which...

Plasmid finder https://cge.cbs.dtu.dk//services/PlasmidFinder/ #Plasmid #Find

Collection of useful bioinformatics tools, specially for prokaryotes http://molbiol-tools.ca/molecular_biology_freeware.htm

#Genome #submission to #GenBank https://www.ncbi.nlm.nih.gov/genbank/genomesubmit/