BOL: All Site Activity

All Site Activity

- Neel@neelam
Neel bookmarked LIBSVM -- A Library for Support Vector Machines 3362 days ago

LIBSVM is an integrated software for support vector classification, (C-SVC, nu-SVC), regression (epsilon-SVR, nu-SVR) and distribution estimation (one-class SVM). It supports multi-class classification. Since version 2.8, it...

https://www.csie.ntu.edu.tw/~cjlin/libsvm/
- Neel@neelam
Neel posted to the wire 3363 days ago

Reformat you fasta sequence with size. $ seqkit seq -w 50 allGenomeContacted.fa > allGenomeContacted_final.fa #Reformat #Fasta #Size
- Neel@neelam
Neel created a new bio-script Extract the fastq sequence with range in Perl 3363 days ago
- Rahul Nayak@rahul
Rahul Nayak created a new bio-script Create a heatmap with R 3364 days ago
- Rahul Nayak@rahul
Rahul Nayak bookmarked R tuorial 3364 days ago

R learning resources https://flowingdata.com/

https://flowingdata.com/
- Jit@jit.aber
Jit bookmarked Quota synteny alignment 3365 days ago

Typically in comparative genomics, we can identify anchors, chain them into syntenic blocks and interpret these blocks as derived from a common descent. However, when comparing two genomes undergone ancient genome duplications (plant genomes in...

https://github.com/tanghaibao/quota-alignment
- Jit@jit.aber
Jit posted to the wire 3365 days ago

Remove unwanted character from fasta file. $ sed -e '/^[^>]/s/[^ATGCatgc]/N/g' file.fa #IUPAC #Special #Character #Remove
- Jit@jit.aber
Jit posted to the wire 3367 days ago

Print each command before executing? Bash script to print each command before executing. $ bash -x myscript.sh #Print #Command #Bash
- Bulbul@bulbul
Bulbul posted to the wire 3367 days ago

https://www.r-bloggers.com/hacking-strings-with-stringi/amp/ #stringi #r #string
- M JAGANNATH@Jagannath_bifau
M JAGANNATH is now a friend with Jit 3367 days ago
M JAGANNATH@Jagannath_bifau
Jit@jit.aber
- Jit@jit.aber
Jit is now a friend with M JAGANNATH 3367 days ago
Jit@jit.aber
M JAGANNATH@Jagannath_bifau
- Jit@jit.aber
Jit bookmarked Web Apollo: a web-based genomic annotation editing platform 3368 days ago

Web Apollo is the first instantaneous, collaborative genomic annotation editor available on the web. One of the natural consequences following from current advances in sequencing technology is that there are more and more researchers sequencing new...

http://genomearchitect.github.io/
- Shruti Paniwala@shruti
Shruti Paniwala commented on the blog Ten International Scholarships for Indian Biotechnology and Bioinformatics Students 3369 days ago

Prestigious "Khorana Program for Scholars" for 10 weeks http://iusstf.org/story/53-50-Khorana-Program.html
- Jit@jit.aber
Jit published a blog post List of genome announcement, notes and reporting journals 3369 days ago

Following are the list of journals publishing pint-sized articles go by various names, such as genome reports, genome announcements, genome notes or genome letters, but will be referred to here broadly as genome reports.
Comments
- Abhimanyu Singh@abhimanyu
  
  Abhimanyu Singh 3204 days ago
  The "Genomic Data" journal also publish genome announcement https://www.journals.elsevier.com/genomics-data/
- Jit@jit.aber
  
  Jit 3076 days ago
  
  Genomics data also accept draft genome assembly papers https://www.sciencedirect.com/journal/genomics-data
- Jit@jit.aber
  
  Jit 2120 days ago
  Computational and Structural Biotechnology Journal for bioinformatics tool publication
- Jit@jit.aber
Jit bookmarked GOLD:Genomes Online Database 3369 days ago

GOLD:Genomes Online Database, is a World Wide Web resource for comprehensive access to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world. https://gold.jgi.doe.gov/

https://gold.jgi.doe.gov/
- Rahul Nayak@rahul
Rahul Nayak answered the question What are the difference between "use", "import" and "require" in Perl? 3370 days ago

The differences are many and often subtle:use only expects a bareword, require can take a bareword or an expressionuse is evaluated at compile-time, require at run-timeSo they behave differently but achieve the same goal. Then there's a list of...
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary posted to the wire 3370 days ago

New DBT announcement at http://www.dbtindia.nic.in/out-reach/latest-announcements/ #DBT #Announcement #GOI
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary posted a new ad in the Opportunity RA Bioinformatics at NATIONAL INSTITUTE OF BIOMEDICAL GENOMICS, INDIA 3370 days ago
- M JAGANNATH@Jagannath_bifau
M JAGANNATH published a news post A National Workshop on "DNA Barcoding and Phylogenetics" 09 th – 12 th August, 2017 @ Andhra... 3370 days ago

http://andhrauniversity.edu.in/webnew/admin/docs/Broucher-for-National-workshop-Aug-2017-18072017.pdf
- Jit@jit.aber
Jit commented on a bookmark MGRA: Breakpoint graphs and ancestral genome reconstructions 3370 days ago

EAGER: efficient ancient genome reconstruction https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0918-z

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