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- Jit@jit.aber
Jit posted to the wire 2832 days ago

Testing Random Dice Rolls http://blogs.perl.org/users/ovid/2014/01/testing-random-dice-rolls.html #Perl #Random #Test #Randomness #Dice
- Jit@jit.aber
Jit posted to the wire 2832 days ago

#GECA: a fast tool for #gene #evolution and #conservation analysis in #eukaryotic #protein #families. https://www.ncbi.nlm.nih.gov/pubmed/22467908
- Jit@jit.aber
Jit created a new bio-script Check overlapping range with Perl 2832 days ago
- Jit@jit.aber
Jit commented on a bookmark List of bioinformatics companies and genomics service providers 2832 days ago

Inside DNA, Computing platform for reproducible research in bioinformatics, genomics and life science https://insidedna.me/
- Jit@jit.aber
Jit commented on the blog Structural variation: the hidden genomic treasure 2832 days ago

Structural variant detection and association testing https://github.com/zeeev/wham
- Jit@jit.aber
Jit bookmarked ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data 2832 days ago

ConPADE (Contig Ploidy and Allele Dosage Estimation), a probabilistic method that estimates the ploidy of any given contig/scaffold based on its allele proportions. In the process, they report findings regarding errors in sequencing. The method can...

https://github.com/microsoftgenomics
- Jit@jit.aber
Jit bookmarked bedtools 2832 days ago

Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For...

http://bedtools.readthedocs.io/en/latest/index.html
- Jit@jit.aber
Jit posted to the wire 2832 days ago

AVID: A Global Alignment Program https://www.ncbi.nlm.nih.gov/pmc/articles/PMC430967/ #AVID #Alignment #Global #Sequence #Genome
- Jit@jit.aber
Jit posted to the wire 2832 days ago

Understanding and manipulating SAM/BAM alignment files http://homer.salk.edu/homer/basicTutorial/samfiles.html #SAM #BAM #File #Explain
- Jit@jit.aber
Jit posted to the wire 2832 days ago

Best way to visualize high-dimensional data. https://www.quora.com/Whats-the-best-way-to-visualize-high-dimensional-data #Visualization #Plot #HighDimention #R
- Jit@jit.aber
Jit posted to the wire 2832 days ago

#GC-Profile: a web-based tool for #visualizing and analyzing the #variation of #GC content in #genomic sequences https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538862/
- Jit@jit.aber
Jit posted to the wire 2832 days ago

Just_Annotate_My_proteins (JAMp) http://jamps.sourceforge.net/ #Protein #Annotate #JAMp
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 2832 days ago

http://www.nature.com/cddis/journal/v8/n2/full/cddis201744a.html #Biomarkers #RNASeq #Cancer
- vinay rajput@vinayrajput
vinay rajput is now a friend with Rahul Agarwal 2832 days ago
vinay rajput@vinayrajput
Rahul Agarwal@raag
- Rahul Agarwal@raag
Rahul Agarwal is now a friend with vinay rajput 2832 days ago
Rahul Agarwal@raag
vinay rajput@vinayrajput
- Rahul Agarwal@raag
Rahul Agarwal is now a friend with Bulbul 2832 days ago
Rahul Agarwal@raag
Bulbul@bulbul
- Bulbul@bulbul
Bulbul is now a friend with Rahul Agarwal 2832 days ago
Bulbul@bulbul
Rahul Agarwal@raag
- Jit@jit.aber
Jit commented on an answer to a question 2833 days ago

I found App::cpanminus very handy in such cases. It create a local Perl5 directory in you profile. wget -O- http://cpanmin.us | perl - -l ~/perl5 App::cpanminus local::lib eval `perl -I ~/perl5/lib/perl5 -Mlocal::lib` echo 'eval `perl -I...
- Jit@jit.aber
Shruti Paniwala chose the best answer to the question How to install Perl packages on servers? 2833 days ago

I found App::cpanminus very handy in such cases. It create a local Perl5 directory in you profile. wget -O- http://cpanmin.us | perl - -l ~/perl5 App::cpanminus local::lib eval `perl -I ~/perl5/lib/perl5 -Mlocal::lib` echo 'eval `perl -I...
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary posted to the wire 2833 days ago

Basics for assembly http://ged.msu.edu/angus/files/lecture4-mapping.pdf #Genome #Mapping #Assembly #PPT

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