BOL

Circos plot tool (J-Circos) that is an interactive visualization tool that can plot Circos figures, as well as being able to dynamically add data to the figure, and providing information for specific data points using mouse hover display and zoom...

I am looking for new, interactive and user friendly tools to see chromosomal rearrangements. I tried IGV, but it does not seems to be very helpful for chromosomal rearrangements visualization. Circos look pretty useless, as it does not allow me to...

This sockeye software uses the Ensembl database project to import sequence and annotation information from several eukaryotic species. A user can additionally import their own custom sequence and annotation data. Individual annotation objects...

GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequence comparison results derived from voluminous BLAST textual output, so as to locate the rearrangements, insertions or deletions of genome segments between species or...

BINC 2017 Exam detail at http://bioinformaticsonline.com/news/view/30744/binc-2017

First of all thanks for using GeneSCF. I am really sorry to say that current GeneSCF does not support new genome annotation. Since many users are requesting, it is possible that we may include this feature in new release along with other...

If it is not fixed by Pradyuma approach. You could try following Type: execstack --version to check if you already have execstack installed. If you get command not found type: sudo apt-get install execstack -y --force-yes Type sudo execstack -c...

I agree with EagleEye. If you are using any online miRNA dataset, I mostly recommended to contact the authorised person.

I always try faSomeRecords, to extract. It is lil handy. See BIOCONDA https://bioconda.github.io/recipes/ucsc-fasomerecords/README.html

You can also try this, if you have lists of ids grep -A1 -w -f id.txt seqFile.fasta > output.fasta

install 32 bit version of java (dont remove 64 bit,Keep both) and make it default (sudo update-alternatives --config java) then try.

#Upgrade the current version of #Linux. $ sudo apt-get update && sudo apt-get upgrade

Check the upload and download stat in Linux. $ sudo apt-get install vnstat

Thanks for GeneSCF, it is really useful.  I am dealing with new genome, with priliminary annotations. The annotated ids are not universally accepted. Once I tried to convert the ids/sequence by matching online database, it fail as most of...

Bioinformatics jobs in New Zealand https://www.seek.co.nz/jobs?keywords=bioinformatics 

BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The application is available...

ABACAS is intended to rapidly contiguate (align, order, orientate) , visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence. It uses MUMmer to find alignment positions and identify syntenies of assembly...

The hive plot is a rational visualization method for drawing networks. Nodes are mapped to and positioned on radially distributed linear axes — this mapping is based on network structural properties. Edges are drawn as curved links....

I always try faSomeRecords, to extract. It is lil handy. See BIOCONDA https://bioconda.github.io/recipes/ucsc-fasomerecords/README.html

maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widley accepted and used to store variants detected. The Cancer Genome Atlas Project...