BOL: All Site Activity

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- Alok Prajapati@Alok
Alok Prajapati is now a friend with Paulina 2979 days ago
Alok Prajapati@Alok
Paulina@Punia90
- Abhi@abhinav
Abhi posted a new ad in the Opportunity SRF Bioinformatics at Bose Institute, India 2980 days ago
- Abhimanyu Singh@abhimanyu
Abhimanyu Singh posted a new ad in the Opportunity Bioinformatics jobs at Chittaranjan National Cancer Institute 2980 days ago
- Jit@jit.aber
Jit commented on a page titled Worldwide funding agencies to fund your bioinformatics research !! 2983 days ago

Bioinformatics funding for Japan Promoting science and technology is a key engine to materialize a bright future of Asia and it is vitally important to enhance the exchange of youths in Asian countries and Japan who will play a crucial role in the...
- Shruti Paniwala@shruti
Shruti Paniwala commented on a bookmark List of Bioinformatics Vacancy, Jobs, Opportunity websites 2983 days ago

Bioinformatics jobs at http://parasite.org.au/jobs/
- Jit@jit.aber
Jit posted to the wire 2986 days ago

Split the text file with line number in Linux: wc -l abc.txt and then: split -l 60000 abc.txt #Split #Break #Line #Ubuntu #Linux #Tricks
- Jit@jit.aber
Jit bookmarked valet 2987 days ago

VALET is a pipeline for performing de novo validation of metagenomic assemblies. VALET checks a number of properties that should hold true for a correct assembly (e.g., mate-pairs are aligned at the correct distance from each other in the...

https://www.cbcb.umd.edu/software/valet
- Abhi@abhinav
Abhi posted to the wire 2989 days ago

Bioinformatics trainee needed at Kalyani http://www.klyuniv.ac.in/upload/employment/AdvtBIFCentre_9.9.2016.pdf #Trainee #Kaluani
- Abhi@abhinav
Abhi posted a new ad in the Opportunity Bioinformatics openings at Sri Venkateswara College, University of Delhi 2989 days ago
- EagleEye@santhilalsubhash
EagleEye published a news post Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms 2990 days ago

Gene Set Clustering based on Functional annotations
Comments
- Abhimanyu Singh@abhimanyu
  
  Abhimanyu Singh 2763 days ago
  Thanks for developing geneSCF, I tried to install it but got the following error
  bio@bio214b[geneSCF-master-source-v1.1-p2] ./prepare_database []
  prepare_database USAGE:
  ./prepare_database -db=[GO_all|GO_BP|GO_MF|GO_CC|KEGG|REACTOME|NCG] -org=[see,org_codes_help]
  ==========
  Options: ALL PARAMETERS MUST BE SPECIFIED
  ==========
  [-db= | --database=] Options:[GO_all|GO_BP|GO_MF|GO_CC|KEGG|REACTOME]
  [-org= | --organism=] Options:[see,org_codes_help]
  
  bio@bio214b[geneSCF-master-source-v1.1-p2] ./prepare_database -db GO_all -org see []
  Error:Please specify one of these databses GO_all,GO_BP,GO_MF,GO_CC,KEGG,NCG,REACTOME
- EagleEye@santhilalsubhash
  
  EagleEye 2763 days ago
  Please check the documentation (no installation is needed, extract and use),
  https://www.biostars.org/p/231384/#231579
  https://www.biostars.org/p/108669/
  http://genescf.kandurilab.org/documentation.php
- Abhimanyu Singh@abhimanyu
  
  Abhimanyu Singh 2762 days ago
  Thanks, I will have a look.
+4 more
- Jit@jit.aber
Jit bookmarked CGView - Circular Genome Viewer 2990 days ago

GView is a Java package used to display and navigate bacterial genomes. GView is useful for producing high-quality genome maps for use in publications and websites, or as a visualization tool in a sequence annotation pipeline. Users can interact...

http://wishart.biology.ualberta.ca/cgview/
- Abhimanyu Singh@abhimanyu
Abhimanyu Singh posted a new ad in the Opportunity SRF Bioinformatics job position in National Institute of Plant Genome Research (NIPGR) 2990 days ago
- Jit@jit.aber
Jit posted to the wire 2993 days ago

Number of thread in Linux: echo $(( `ps axms | wc -l` - 1)) #Thread #Info #Linux
- Radha Agarkar@radhaagarkar
Radha Agarkar posted to the wire 2993 days ago

Extract sequence by using Ids file (assuming one ids in a line): perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @ARGV' ids.file fasta.file #PerlTricks #PerlOneliner #Perl #Extract #Ids #
- Radha Agarkar@radhaagarkar
Radha Agarkar posted to the wire 2993 days ago

Extract fasta sequence by Ids: perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file #Perl #PerlOneliner #PerlTrick #Extract #Ids #Fasta
- Shruti Paniwala@shruti
Shruti Paniwala posted to the wire 2994 days ago

Rename the fasta name perl -ane 'if(/\>/){$a++; @foo = split /\s+/;$_ = join '_', @foo; print "$_\n"}else{print;}' your.fasta > new.fa #PerlTrick #PerlOneliner #Perl
- Neel@neelam
Neel answered the question Which are the best known web server for protein structure prediction? 2997 days ago

My favourate server CASTp http://sts.bioe.uic.edu/castp/view/viewer2.php . Hope you gonna like it as well.
- Poonam Mahapatra@poonam
Poonam Mahapatra answered the question Which are the best known web server for protein structure prediction? 2997 days ago

I-TASSER is the best server for protein structure prediction according to the 2006-2012 CASP experiments. The standalone I-TASSER package is freely available for download. You can also have a look at...
- Tayyba Jadoon@tayybaazhar
Tayyba Jadoon asked Which are the best known web server for protein structure prediction? 2999 days ago

Anyone PhD here ? I need help in protein structure prediction.
- Manisha Sadana@Manixha
Manisha Sadana is now a friend with Poonam Mahapatra 2999 days ago
Manisha Sadana@Manixha
Poonam Mahapatra@poonam

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