BOL: All Site Activity

All Site Activity

- Jit@jit.aber
Jit posted to the wire 3008 days ago

Plot genomoc data https://cran.r-project.org/web/packages/circlize/vignettes/genomic_plot.pdf #Circlize #R #Genome #Plot
- Jit@jit.aber
Jit bookmarked Redundans 3008 days ago

Redundans pipeline assists an assembly of heterozygous genomes.Program takes as input assembled contigs, paired-end and/or mate pairs sequencing libraries and returns scaffolded homozygous genome assembly, that should...

https://github.com/Gabaldonlab/redundans
- Jit@jit.aber
Jit bookmarked BRAKER: pipeline for fully automated prediction of protein coding genes with GeneMark-ES/ET and... 3008 days ago

Gene finding in eukaryotic genomes is notoriously difficult to automate. The task is to design a work flow with a minimal set of tools that would reach state-of-the-art performance across a wide range of species. GeneMark-ET is a gene prediction...

http://bioinf.uni-greifswald.de/bioinf/braker/
- Jitendra Narayan@admin
Jitendra Narayan posted to the wire 3008 days ago

Comparative genomics resources https://www.dcode.org/ #Genomics #Resources #DCODE #Genome #Compare
- Strand@Strand
Strand published a blog post Webinar on Implications of Next Generation Sequencing in Molecular Diagnosis of Cancer on 28 Sep... 3008 days ago

Live webinar on Implications of NGS in molecular diagnosis of cancer
- Jit@jit.aber
Jit bookmarked Sushi: An R/Bioconductor package for visualizing genomic data 3009 days ago

Sushi: An R/Bioconductor package for visualizing genomic data

https://www.bioconductor.org/packages/devel/bioc/vignettes/Sushi/inst/doc/Sushi.pdf
- Jit@jit.aber
Jit posted to the wire 3009 days ago

The clean R graphs http://shinyapps.org/apps/RGraphCompendium/index.php #R #Graphs #Clean #Plot
- Jit@jit.aber
Jit answered the question How to intrepet the FASTQ files? 3010 days ago

I will recommend you to please read this paper http://www.ncbi.nlm.nih.gov/pubmed?term=20015970 by Peter J. A. Cock. You can find more on wiki page https://en.wikipedia.org/wiki/FASTQ_format as well.
- Hardeep Kaur@hardeep
Hardeep Kaur asked How to intrepet the FASTQ files? 3010 days ago

How to intrepet the FASTQ files? What does Q score mean? Does + have any meanings?
- Hardeep Kaur@hardeep
Hardeep Kaur posted a new ad in the Opportunity Scientist at Advanced Centre for Treatment, Research and Education in Cancer - Navi Mumbai,... 3010 days ago
- Hardeep Kaur@hardeep
Hardeep Kaur is now a friend with Jit 3010 days ago
Hardeep Kaur@hardeep
Jit@jit.aber
- Jit@jit.aber
Jit is now a friend with Hardeep Kaur 3010 days ago
Jit@jit.aber
Hardeep Kaur@hardeep
- Poonam Mahapatra@poonam
Poonam Mahapatra posted to the wire 3011 days ago

DiscovarDenovo assembly ppt https://banana-slug.soe.ucsc.edu/_media/team_5_report_1.pdf #PPT #Assembly #Help #Steps
- Poonam Mahapatra@poonam
Poonam Mahapatra bookmarked Ka, Ks and Ka/Ks calculations 3011 days ago

gKaKs is a codon-based genome-level Ka/Ks computation pipeline developed and based on programs from four widely used packages: BLAT, BLASTALL (including bl2seq, formatdb and fastacmd), PAML (including codeml and yn00) and KaKs_Calculator (including...

http://longlab.uchicago.edu/?q=gKaKs
- Poonam Mahapatra@poonam
Poonam Mahapatra posted to the wire 3011 days ago

Gaze for gene prediction http://www.ncbi.nlm.nih.gov/pmc/articles/PMC186661/ # Genes #Predictions #Genome #Tools #Gaze
- Poonam Mahapatra@poonam
Poonam Mahapatra bookmarked Useful Bioinformatics Tools 3011 days ago

Collections of few handy tools for bioinformatician http://molbiol-tools.ca/Convert.htm

http://molbiol-tools.ca/Convert.htm
Comments
- Jit@jit.aber
  
  Jit 2744 days ago
  Collection of useful bioinformatics tools, specially for prokaryotes http://molbiol-tools.ca/molecular_biology_freeware.htm
- Neel@neelam
Neel commented on a bookmark List of Bioinformatics Vacancy, Jobs, Opportunity websites 3012 days ago

Bbioinformatics jobs at Malaysia http://www.jobstreet.com.my/en/job-search/job-vacancy.php?ojs=10&key=bioinformatics
- Poonam Mahapatra@poonam
Poonam Mahapatra bookmarked Gene Finding and Predictions 3014 days ago

In this exercise, a previously annotated gene will be used to measure the accuracy of different gene finding approaches. GRAIL, GENSCAN, geneid, FGENESH, GenomeScan, GrailEXP and GENEWISE will be used to annotate the sequence. Both search by...

http://genome.crg.es/courses/Bioinformatics2003_genefinding/
- Poonam Mahapatra@poonam
Poonam Mahapatra bookmarked GeneValidator - Identify problems with predicted genes 3014 days ago

GeneValidator helps in identifing problems with gene predictions and provide useful information extracted from analysing orthologs in BLAST databases. The results produced can be used by biocurators and researchers who need accurate gene...

https://github.com/wurmlab/genevalidator
- Neel@neelam
Neel answered the question How can I get the allele frequency of my variant? 3014 days ago

I google and find this FAQ page http://www.1000genomes.org/faq/how-can-i-get-allele-frequency-my-variant/ Hope useful.

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