BOL: All Site Activity

All Site Activity

- LEGE@lege
LEGE posted to the wire 1213 days ago

Count number of fasta sequence $ awk '/^>/ { f = !a[$0]++ } f' aaaa.fa > bbbb.fa #count #fasta #oneliner
- LEGE@lege
LEGE posted to the wire 1213 days ago

Snakemake pipeline https://git.scicore.unibas.ch/zavolan_public/A-seq2-processing #A-Seq2 #Snakemake
- LEGE@lege
LEGE created a new bio-script Python script to read FASTA and FASTQ file ! 1213 days ago
- Jit@jit.aber
Jit posted to the wire 1214 days ago

#NLP-MeTaxa: A Natural Language Processing Approach for #Metagenomic #Taxonomic #Binning Based on Deep Learning https://github.com/padriba/NLP_MeTaxa/
- Jit@jit.aber
Jit posted a new ad in the Opportunity Nigerian Bioinformatics and Genomics Network (NBGN) 1215 days ago
- Neel@neelam
Neel created a new bio-script Print in terminal with python ! 1215 days ago
- Jit@jit.aber
Jit posted to the wire 1215 days ago

Understanding Covid variant https://sangerinstitute.blog/2021/06/29/covid-connections-variant-or-villain/ #Covid #Variant #Disease #SARS-Cov2
- Neel@neelam
Neel commented on the bio-script Estimate Genome Size with Jellyfish and R 1218 days ago

Jellyfish manual at http://www.genome.umd.edu/docs/JellyfishUserGuide.pdf
- Neel@neelam
Neel created a new bio-script Install Jellyfish on Linux ! 1218 days ago
- Jit@jit.aber
Jit posted to the wire 1218 days ago

#Ten simple #rules for organizing a #bioinformatics #training #course in low- and #middle-income countries https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009218
- Jit@jit.aber
Jit posted a new ad in the Opportunity Postdoc position at Kiel University, Germany 1218 days ago
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary created a new bio-script List of string comparison algorithms ! 1219 days ago
- Neel@neelam
Neel posted to the wire 1219 days ago

Bioinformatics summit at Delhi, India https://webs.iiitd.edu.in/hitsummit/ #Free #Summit #HIT #Health
- Neel@neelam
Neel bookmarked biostarhandbook 1219 days ago

Nice book collection for bioinformatician ... highly recommended.

https://www.biostarhandbook.com/
- Neel@neelam
Neel bookmarked Applying MinHash to cluster RNAseq samples 1220 days ago

A kmer blog worth spending time on

http://ivory.idyll.org/blog/2016-sourmash.html
- Neel@neelam
Neel bookmarked k-mers tutorial - classification and taxonomy 1220 days ago

DNA k-mers underlie much of our assembly work, and we (along with many others!) have spent a lot of time thinking about how to store k-mer graphs efficiently, discard redundant data, and count them efficiently. More recently, we've...

http://ivory.idyll.org/blog/2017-something-about-kmers.html
- Neel@neelam
Neel posted to the wire 1220 days ago

#RepExpress: A Novel #Pipeline for the Quantification and Characterization of #Transposable #Element #Expression from RNA-seq Data https://pubmed.ncbi.nlm.nih.gov/34387946/
- Jit@jit.aber
Jit bookmarked Genome Assembly Workshop 2020 1221 days ago

Our team offers custom bioinformatics services to academic and private organizations. We have a strong academic background with a focus on cutting edge, open source software. We replicate standard analysis pipelines (best practices) when...

https://ucdavis-bioinformatics-training.github.io/2020-Genome_Assembly_Workshop/snakemake/snakemake_intro
- Jit@jit.aber
Jit created a new bio-script Commands to transfer files and folder in docker ! 1222 days ago
- Jit@jit.aber
Jit answered the question How to get the container id ? 1222 days ago

sudo docker container ls --all will list all container in ur system.

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