BOL

I am Dr Olusola B SOKEFUN, male, Nigerian with Lagos State University as an academic staff. I have recently concluded my PhD at the Federal University of Agriculture, Abeokuta in Ogun State Nigeria.

My project topis is 'Phylogeny, Phylogeography and Population Structure of the large river Pranws Macrobrachium species in the Southern Nigeria river drainge system. I sequenced the 12S,16S and the CO1 genes for this work.

I have opted to make evolutionary bioinformatics as specialist area. I wish that I can find a collaborator or expert under whose tutelage I will be guided. My interest is in the circumtropical species such as Peguins, Prawns, Shripms, doves that are found in almost all continents and climes. In the GenBank, several gene segments and sometimes the whole mitogenome have been sequenced. Comparing these available data is of interest to me. I need limited help as I have funding. 

Neelam[Val] python []
Python 3.5.2 (default, Nov 23 2017, 16:37:01)
[GCC 5.4.0 20160609] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> q()
Traceback (most recent call last):
File "", line 1, in
NameError: name 'q' is not defined
>>> exit
Use exit() or Ctrl-D (i.e. EOF) to exit
>>> exit()
Nelaam[Val] which python []
/usr/bin/python
Neelam[Val] sudo apt install python2.7 []
Reading package lists... Done
Building dependency tree
Reading state information... Done
python2.7 is already the newest version (2.7.12-1ubuntu0~16.04.4).
The following packages were automatically installed and are no longer required:
libllvm5.0 libllvm5.0:i386 ocqt562+240-libqt5core5a ocqt562+240-libqt5dbus5
ocqt562+240-libqt5gui5 ocqt562+240-libqt5keychain1
ocqt562+240-libqt5network5 ocqt562+240-libqt5printsupport5
ocqt562+240-libqt5sql5 ocqt562+240-libqt5sql5-sqlite
ocqt562+240-libqt5webkit5 ocqt562+240-libqt5widgets5 ocqt562+240-libqt5xml5
ocqt562+240-qtsvg5
Use 'sudo apt autoremove' to remove them.
The following packages will be upgraded:
libglib2.0-dev
1 upgraded, 0 newly installed, 0 to remove and 218 not upgraded.
9 not fully installed or removed.
Need to get 0 B/1.379 kB of archives.
After this operation, 0 B of additional disk space will be used.
(Reading database ... 592402 files and directories currently installed.)
Preparing to unpack .../libglib2.0-dev_2.48.2-0ubuntu4.1_amd64.deb ...
Unpacking libglib2.0-dev (2.48.2-0ubuntu4.1) over (2.48.2-0ubuntu4) ...
Processing triggers for man-db (2.7.5-1) ...
Processing triggers for libglib2.0-0:amd64 (2.48.2-0ubuntu4.1) ...
Processing triggers for libglib2.0-0:i386 (2.48.2-0ubuntu4.1) ...
Setting up libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.4) ...
Setting up python2.7-minimal (2.7.12-1ubuntu0~16.04.4) ...
Setting up htop (2.0.1-1ubuntu1) ...
Setting up libglib2.0-dev (2.48.2-0ubuntu4.1) ...
Setting up libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.4) ...
Setting up libpython2.7:amd64 (2.7.12-1ubuntu0~16.04.4) ...
Setting up libpython2.7-dev:amd64 (2.7.12-1ubuntu0~16.04.4) ...
Setting up python2.7 (2.7.12-1ubuntu0~16.04.4) ...
Setting up python2.7-dev (2.7.12-1ubuntu0~16.04.4) ...
Processing triggers for libc-bin (2.23-0ubuntu10) ...
Neelam[Val] python -v []
import _frozen_importlib # frozen
import _imp # builtin
import sys # builtin
import '_warnings' # <class '_frozen_importlib.BuiltinImporter'>
import '_thread' # <class '_frozen_importlib.BuiltinImporter'>
import '_weakref' # <class '_frozen_importlib.BuiltinImporter'>
import '_frozen_importlib_external' # <class '_frozen_importlib.FrozenImporter'>
import '_io' # <class '_frozen_importlib.BuiltinImporter'>
import 'marshal' # <class '_frozen_importlib.BuiltinImporter'>
import 'posix' # <class '_frozen_importlib.BuiltinImporter'>
import _thread # previously loaded ('_thread')
import '_thread' # <class '_frozen_importlib.BuiltinImporter'>
import _weakref # previously loaded ('_weakref')
import '_weakref' # <class '_frozen_importlib.BuiltinImporter'>
# installing zipimport hook
import 'zipimport' # <class '_frozen_importlib.BuiltinImporter'>
# installed zipimport hook
# /usr/lib/python3.5/encodings/__pycache__/__init__.cpython-35.pyc matches /usr/lib/python3.5/encodings/__init__.py
# code object from '/usr/lib/python3.5/encodings/__pycache__/__init__.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/codecs.cpython-35.pyc matches /usr/lib/python3.5/codecs.py
# code object from '/usr/lib/python3.5/__pycache__/codecs.cpython-35.pyc'
import '_codecs' # <class '_frozen_importlib.BuiltinImporter'>
import 'codecs' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798e8b128>
# /usr/lib/python3.5/encodings/__pycache__/aliases.cpython-35.pyc matches /usr/lib/python3.5/encodings/aliases.py
# code object from '/usr/lib/python3.5/encodings/__pycache__/aliases.cpython-35.pyc'
import 'encodings.aliases' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798e19be0>
import 'encodings' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798e83cf8>
# /usr/lib/python3.5/encodings/__pycache__/utf_8.cpython-35.pyc matches /usr/lib/python3.5/encodings/utf_8.py
# code object from '/usr/lib/python3.5/encodings/__pycache__/utf_8.cpython-35.pyc'
import 'encodings.utf_8' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798e279b0>
import '_signal' # <class '_frozen_importlib.BuiltinImporter'>
# /usr/lib/python3.5/encodings/__pycache__/latin_1.cpython-35.pyc matches /usr/lib/python3.5/encodings/latin_1.py
# code object from '/usr/lib/python3.5/encodings/__pycache__/latin_1.cpython-35.pyc'
import 'encodings.latin_1' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798e2a4e0>
# /usr/lib/python3.5/__pycache__/io.cpython-35.pyc matches /usr/lib/python3.5/io.py
# code object from '/usr/lib/python3.5/__pycache__/io.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/abc.cpython-35.pyc matches /usr/lib/python3.5/abc.py
# code object from '/usr/lib/python3.5/__pycache__/abc.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/_weakrefset.cpython-35.pyc matches /usr/lib/python3.5/_weakrefset.py
# code object from '/usr/lib/python3.5/__pycache__/_weakrefset.cpython-35.pyc'
import '_weakrefset' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798e30198>
import 'abc' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798e2a978>
import 'io' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798e2a710>
# /usr/lib/python3.5/__pycache__/site.cpython-35.pyc matches /usr/lib/python3.5/site.py
# code object from '/usr/lib/python3.5/__pycache__/site.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/os.cpython-35.pyc matches /usr/lib/python3.5/os.py
# code object from '/usr/lib/python3.5/__pycache__/os.cpython-35.pyc'
import 'errno' # <class '_frozen_importlib.BuiltinImporter'>
# /usr/lib/python3.5/__pycache__/stat.cpython-35.pyc matches /usr/lib/python3.5/stat.py
# code object from '/usr/lib/python3.5/__pycache__/stat.cpython-35.pyc'
import '_stat' # <class '_frozen_importlib.BuiltinImporter'>
import 'stat' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798dd57f0>
# /usr/lib/python3.5/__pycache__/posixpath.cpython-35.pyc matches /usr/lib/python3.5/posixpath.py
# code object from '/usr/lib/python3.5/__pycache__/posixpath.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/genericpath.cpython-35.pyc matches /usr/lib/python3.5/genericpath.py
# code object from '/usr/lib/python3.5/__pycache__/genericpath.cpython-35.pyc'
import 'genericpath' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798de00b8>
import 'posixpath' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798dd5b38>
# /usr/lib/python3.5/__pycache__/_collections_abc.cpython-35.pyc matches /usr/lib/python3.5/_collections_abc.py
# code object from '/usr/lib/python3.5/__pycache__/_collections_abc.cpython-35.pyc'
import '_collections_abc' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798de0710>
import 'os' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798e3ff98>
# /usr/lib/python3.5/__pycache__/_sitebuiltins.cpython-35.pyc matches /usr/lib/python3.5/_sitebuiltins.py
# code object from '/usr/lib/python3.5/__pycache__/_sitebuiltins.cpython-35.pyc'
import '_sitebuiltins' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798e452b0>
# /usr/lib/python3.5/__pycache__/sysconfig.cpython-35.pyc matches /usr/lib/python3.5/sysconfig.py
# code object from '/usr/lib/python3.5/__pycache__/sysconfig.cpython-35.pyc'
import 'sysconfig' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798e11e80>
# /usr/lib/python3.5/__pycache__/_sysconfigdata.cpython-35.pyc matches /usr/lib/python3.5/_sysconfigdata.py
# code object from '/usr/lib/python3.5/__pycache__/_sysconfigdata.cpython-35.pyc'
# /usr/lib/python3.5/plat-x86_64-linux-gnu/__pycache__/_sysconfigdata_m.cpython-35.pyc matches /usr/lib/python3.5/plat-x86_64-linux-gnu/_sysconfigdata_m.py
# code object from '/usr/lib/python3.5/plat-x86_64-linux-gnu/__pycache__/_sysconfigdata_m.cpython-35.pyc'
import '_sysconfigdata_m' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798d9e9b0>
import '_sysconfigdata' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798d9e5c0>
# /usr/lib/python3.5/__pycache__/_bootlocale.cpython-35.pyc matches /usr/lib/python3.5/_bootlocale.py
# code object from '/usr/lib/python3.5/__pycache__/_bootlocale.cpython-35.pyc'
import '_locale' # <class '_frozen_importlib.BuiltinImporter'>
import '_bootlocale' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798dada58>
# /usr/lib/python3.5/__pycache__/types.cpython-35.pyc matches /usr/lib/python3.5/types.py
# code object from '/usr/lib/python3.5/__pycache__/types.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/functools.cpython-35.pyc matches /usr/lib/python3.5/functools.py
# code object from '/usr/lib/python3.5/__pycache__/functools.cpython-35.pyc'
import '_functools' # <class '_frozen_importlib.BuiltinImporter'>
# /usr/lib/python3.5/collections/__pycache__/__init__.cpython-35.pyc matches /usr/lib/python3.5/collections/__init__.py
# code object from '/usr/lib/python3.5/collections/__pycache__/__init__.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/operator.cpython-35.pyc matches /usr/lib/python3.5/operator.py
# code object from '/usr/lib/python3.5/__pycache__/operator.cpython-35.pyc'
import '_operator' # <class '_frozen_importlib.BuiltinImporter'>
import 'operator' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7797893eb8>
# /usr/lib/python3.5/__pycache__/keyword.cpython-35.pyc matches /usr/lib/python3.5/keyword.py
# code object from '/usr/lib/python3.5/__pycache__/keyword.cpython-35.pyc'
import 'keyword' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77978a5208>
# /usr/lib/python3.5/__pycache__/heapq.cpython-35.pyc matches /usr/lib/python3.5/heapq.py
# code object from '/usr/lib/python3.5/__pycache__/heapq.cpython-35.pyc'
import '_heapq' # <class '_frozen_importlib.BuiltinImporter'>
import 'heapq' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77978a5a90>
import 'itertools' # <class '_frozen_importlib.BuiltinImporter'>
# /usr/lib/python3.5/__pycache__/reprlib.cpython-35.pyc matches /usr/lib/python3.5/reprlib.py
# code object from '/usr/lib/python3.5/__pycache__/reprlib.cpython-35.pyc'
import 'reprlib' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77978a5f28>
import '_collections' # <class '_frozen_importlib.BuiltinImporter'>
import 'collections' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798dc6940>
# /usr/lib/python3.5/__pycache__/weakref.cpython-35.pyc matches /usr/lib/python3.5/weakref.py
# code object from '/usr/lib/python3.5/__pycache__/weakref.cpython-35.pyc'
import 'weakref' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77978a9b00>
import 'functools' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798db9630>
# /usr/lib/python3.5/collections/__pycache__/abc.cpython-35.pyc matches /usr/lib/python3.5/collections/abc.py
# code object from '/usr/lib/python3.5/collections/__pycache__/abc.cpython-35.pyc'
import 'collections.abc' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798dbd5f8>
import 'types' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798db59b0>
# /usr/lib/python3.5/importlib/__pycache__/__init__.cpython-35.pyc matches /usr/lib/python3.5/importlib/__init__.py
# code object from '/usr/lib/python3.5/importlib/__pycache__/__init__.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/warnings.cpython-35.pyc matches /usr/lib/python3.5/warnings.py
# code object from '/usr/lib/python3.5/__pycache__/warnings.cpython-35.pyc'
import 'warnings' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798dbde10>
import 'importlib' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798db5d68>
# /usr/lib/python3.5/importlib/__pycache__/util.cpython-35.pyc matches /usr/lib/python3.5/importlib/util.py
# code object from '/usr/lib/python3.5/importlib/__pycache__/util.cpython-35.pyc'
# /usr/lib/python3.5/importlib/__pycache__/abc.cpython-35.pyc matches /usr/lib/python3.5/importlib/abc.py
# code object from '/usr/lib/python3.5/importlib/__pycache__/abc.cpython-35.pyc'
# /usr/lib/python3.5/importlib/__pycache__/machinery.cpython-35.pyc matches /usr/lib/python3.5/importlib/machinery.py
# code object from '/usr/lib/python3.5/importlib/__pycache__/machinery.cpython-35.pyc'
import 'importlib.machinery' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7797854748>
import 'importlib.abc' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7797854128>
# /usr/lib/python3.5/__pycache__/contextlib.cpython-35.pyc matches /usr/lib/python3.5/contextlib.py
# code object from '/usr/lib/python3.5/__pycache__/contextlib.cpython-35.pyc'
import 'contextlib' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779785d400>
import 'importlib.util' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779784aac8>
# possible namespace for /usr/local/lib/python3.5/dist-packages/mpl_toolkits
# possible namespace for /usr/local/lib/python3.5/dist-packages/mpl_toolkits
# destroy mpl_toolkits
# /usr/lib/python3.5/__pycache__/sitecustomize.cpython-35.pyc matches /usr/lib/python3.5/sitecustomize.py
# code object from '/usr/lib/python3.5/__pycache__/sitecustomize.cpython-35.pyc'
# /usr/lib/python3/dist-packages/__pycache__/apport_python_hook.cpython-35.pyc matches /usr/lib/python3/dist-packages/apport_python_hook.py
# code object from '/usr/lib/python3/dist-packages/__pycache__/apport_python_hook.cpython-35.pyc'
import 'apport_python_hook' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779786c240>
import 'sitecustomize' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7797866518>
import 'site' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798e39a90>
Python 3.5.2 (default, Nov 23 2017, 16:37:01)
[GCC 5.4.0 20160609] on linux
Type "help", "copyright", "credits" or "license" for more information.
# extension module 'readline' loaded from '/usr/lib/python3.5/lib-dynload/readline.cpython-35m-x86_64-linux-gnu.so'
# extension module 'readline' executed from '/usr/lib/python3.5/lib-dynload/readline.cpython-35m-x86_64-linux-gnu.so'
import 'readline' # <_frozen_importlib_external.ExtensionFileLoader object at 0x7f779786c748>
import 'atexit' # <class '_frozen_importlib.BuiltinImporter'>
# /usr/lib/python3.5/__pycache__/rlcompleter.cpython-35.pyc matches /usr/lib/python3.5/rlcompleter.py
# code object from '/usr/lib/python3.5/__pycache__/rlcompleter.cpython-35.pyc'
import 'rlcompleter' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779786c860>
>>> clear
# /usr/lib/python3.5/__pycache__/re.cpython-35.pyc matches /usr/lib/python3.5/re.py
# code object from '/usr/lib/python3.5/__pycache__/re.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/sre_compile.cpython-35.pyc matches /usr/lib/python3.5/sre_compile.py
# code object from '/usr/lib/python3.5/__pycache__/sre_compile.cpython-35.pyc'
import '_sre' # <class '_frozen_importlib.BuiltinImporter'>
# /usr/lib/python3.5/__pycache__/sre_parse.cpython-35.pyc matches /usr/lib/python3.5/sre_parse.py
# code object from '/usr/lib/python3.5/__pycache__/sre_parse.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/sre_constants.cpython-35.pyc matches /usr/lib/python3.5/sre_constants.py
# code object from '/usr/lib/python3.5/__pycache__/sre_constants.cpython-35.pyc'
import 'sre_constants' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7797160048>
import 'sre_parse' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779787a860>
import 'sre_compile' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7797876908>
# /usr/lib/python3.5/__pycache__/copyreg.cpython-35.pyc matches /usr/lib/python3.5/copyreg.py
# code object from '/usr/lib/python3.5/__pycache__/copyreg.cpython-35.pyc'
import 'copyreg' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77971690f0>
import 're' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779786cbe0>
# /usr/lib/python3.5/__pycache__/traceback.cpython-35.pyc matches /usr/lib/python3.5/traceback.py
# code object from '/usr/lib/python3.5/__pycache__/traceback.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/linecache.cpython-35.pyc matches /usr/lib/python3.5/linecache.py
# code object from '/usr/lib/python3.5/__pycache__/linecache.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/tokenize.cpython-35.pyc matches /usr/lib/python3.5/tokenize.py
# code object from '/usr/lib/python3.5/__pycache__/tokenize.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/token.cpython-35.pyc matches /usr/lib/python3.5/token.py
# code object from '/usr/lib/python3.5/__pycache__/token.cpython-35.pyc'
import 'token' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779717d978>
import 'tokenize' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77971734e0>
import 'linecache' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77971732e8>
import 'traceback' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7797169550>
# /usr/lib/python3/dist-packages/apport/__pycache__/__init__.cpython-35.pyc matches /usr/lib/python3/dist-packages/apport/__init__.py
# code object from '/usr/lib/python3/dist-packages/apport/__pycache__/__init__.cpython-35.pyc'
import 'time' # <class '_frozen_importlib.BuiltinImporter'>
# /usr/lib/python3/dist-packages/apport/__pycache__/report.cpython-35.pyc matches /usr/lib/python3/dist-packages/apport/report.py
# code object from '/usr/lib/python3/dist-packages/apport/__pycache__/report.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/subprocess.cpython-35.pyc matches /usr/lib/python3.5/subprocess.py
# code object from '/usr/lib/python3.5/__pycache__/subprocess.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/signal.cpython-35.pyc matches /usr/lib/python3.5/signal.py
# code object from '/usr/lib/python3.5/__pycache__/signal.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/enum.cpython-35.pyc matches /usr/lib/python3.5/enum.py
# code object from '/usr/lib/python3.5/__pycache__/enum.cpython-35.pyc'
import 'enum' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779712e898>
import 'signal' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779712e0f0>
import '_posixsubprocess' # <class '_frozen_importlib.BuiltinImporter'>
import 'select' # <class '_frozen_importlib.BuiltinImporter'>
# /usr/lib/python3.5/__pycache__/selectors.cpython-35.pyc matches /usr/lib/python3.5/selectors.py
# code object from '/usr/lib/python3.5/__pycache__/selectors.cpython-35.pyc'
import 'math' # <class '_frozen_importlib.BuiltinImporter'>
import 'selectors' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7797143240>
# /usr/lib/python3.5/__pycache__/threading.cpython-35.pyc matches /usr/lib/python3.5/threading.py
# code object from '/usr/lib/python3.5/__pycache__/threading.cpython-35.pyc'
import 'threading' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779714c4a8>
import 'subprocess' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779711e7f0>
# /usr/lib/python3.5/__pycache__/tempfile.cpython-35.pyc matches /usr/lib/python3.5/tempfile.py
# code object from '/usr/lib/python3.5/__pycache__/tempfile.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/shutil.cpython-35.pyc matches /usr/lib/python3.5/shutil.py
# code object from '/usr/lib/python3.5/__pycache__/shutil.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/fnmatch.cpython-35.pyc matches /usr/lib/python3.5/fnmatch.py
# code object from '/usr/lib/python3.5/__pycache__/fnmatch.cpython-35.pyc'
import 'fnmatch' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798d78a20>
# /usr/lib/python3.5/__pycache__/tarfile.cpython-35.pyc matches /usr/lib/python3.5/tarfile.py
# code object from '/usr/lib/python3.5/__pycache__/tarfile.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/struct.cpython-35.pyc matches /usr/lib/python3.5/struct.py
# code object from '/usr/lib/python3.5/__pycache__/struct.cpython-35.pyc'
import '_struct' # <class '_frozen_importlib.BuiltinImporter'>
import 'struct' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7797088630>
# /usr/lib/python3.5/__pycache__/copy.cpython-35.pyc matches /usr/lib/python3.5/copy.py
# code object from '/usr/lib/python3.5/__pycache__/copy.cpython-35.pyc'
import 'copy' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7797088940>
import 'grp' # <class '_frozen_importlib.BuiltinImporter'>
import 'pwd' # <class '_frozen_importlib.BuiltinImporter'>
import 'tarfile' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798d78dd8>
# /usr/lib/python3.5/__pycache__/bz2.cpython-35.pyc matches /usr/lib/python3.5/bz2.py
# code object from '/usr/lib/python3.5/__pycache__/bz2.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/_compression.cpython-35.pyc matches /usr/lib/python3.5/_compression.py
# code object from '/usr/lib/python3.5/__pycache__/_compression.cpython-35.pyc'
import '_compression' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7797090d30>
# extension module '_bz2' loaded from '/usr/lib/python3.5/lib-dynload/_bz2.cpython-35m-x86_64-linux-gnu.so'
# extension module '_bz2' executed from '/usr/lib/python3.5/lib-dynload/_bz2.cpython-35m-x86_64-linux-gnu.so'
import '_bz2' # <_frozen_importlib_external.ExtensionFileLoader object at 0x7f77970a2668>
import 'bz2' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798d801d0>
# /usr/lib/python3.5/__pycache__/lzma.cpython-35.pyc matches /usr/lib/python3.5/lzma.py
# code object from '/usr/lib/python3.5/__pycache__/lzma.cpython-35.pyc'
# extension module '_lzma' loaded from '/usr/lib/python3.5/lib-dynload/_lzma.cpython-35m-x86_64-linux-gnu.so'
# extension module '_lzma' executed from '/usr/lib/python3.5/lib-dynload/_lzma.cpython-35m-x86_64-linux-gnu.so'
import '_lzma' # <_frozen_importlib_external.ExtensionFileLoader object at 0x7f77970a91d0>
import 'lzma' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77970a2940>
import 'shutil' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798d6ce80>
# /usr/lib/python3.5/__pycache__/random.cpython-35.pyc matches /usr/lib/python3.5/random.py
# code object from '/usr/lib/python3.5/__pycache__/random.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/hashlib.cpython-35.pyc matches /usr/lib/python3.5/hashlib.py
# code object from '/usr/lib/python3.5/__pycache__/hashlib.cpython-35.pyc'
# extension module '_hashlib' loaded from '/usr/lib/python3.5/lib-dynload/_hashlib.cpython-35m-x86_64-linux-gnu.so'
# extension module '_hashlib' executed from '/usr/lib/python3.5/lib-dynload/_hashlib.cpython-35m-x86_64-linux-gnu.so'
import '_hashlib' # <_frozen_importlib_external.ExtensionFileLoader object at 0x7f77970b8a20>
import 'hashlib' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77970b2f60>
import '_random' # <class '_frozen_importlib.BuiltinImporter'>
import 'random' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7798d6cf60>
import 'tempfile' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779711e748>
# /usr/lib/python3.5/__pycache__/glob.cpython-35.pyc matches /usr/lib/python3.5/glob.py
# code object from '/usr/lib/python3.5/__pycache__/glob.cpython-35.pyc'
import 'glob' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77970b8588>
# /usr/lib/python3.5/__pycache__/locale.cpython-35.pyc matches /usr/lib/python3.5/locale.py
# code object from '/usr/lib/python3.5/__pycache__/locale.cpython-35.pyc'
import 'locale' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77967ff128>
# /usr/lib/python3.5/__pycache__/imp.cpython-35.pyc matches /usr/lib/python3.5/imp.py
# code object from '/usr/lib/python3.5/__pycache__/imp.cpython-35.pyc'
import 'imp' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779681a0f0>
# /usr/lib/python3.5/xml/__pycache__/__init__.cpython-35.pyc matches /usr/lib/python3.5/xml/__init__.py
# code object from '/usr/lib/python3.5/xml/__pycache__/__init__.cpython-35.pyc'
import 'xml' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779681a9e8>
# /usr/lib/python3.5/xml/dom/__pycache__/__init__.cpython-35.pyc matches /usr/lib/python3.5/xml/dom/__init__.py
# code object from '/usr/lib/python3.5/xml/dom/__pycache__/__init__.cpython-35.pyc'
# /usr/lib/python3.5/xml/dom/__pycache__/domreg.cpython-35.pyc matches /usr/lib/python3.5/xml/dom/domreg.py
# code object from '/usr/lib/python3.5/xml/dom/__pycache__/domreg.cpython-35.pyc'
import 'xml.dom.domreg' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77968235f8>
import 'xml.dom' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779681ac50>
# /usr/lib/python3.5/xml/dom/__pycache__/minidom.cpython-35.pyc matches /usr/lib/python3.5/xml/dom/minidom.py
# code object from '/usr/lib/python3.5/xml/dom/__pycache__/minidom.cpython-35.pyc'
# /usr/lib/python3.5/xml/dom/__pycache__/minicompat.cpython-35.pyc matches /usr/lib/python3.5/xml/dom/minicompat.py
# code object from '/usr/lib/python3.5/xml/dom/__pycache__/minicompat.cpython-35.pyc'
import 'xml.dom.minicompat' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779617b7b8>
# /usr/lib/python3.5/xml/dom/__pycache__/xmlbuilder.cpython-35.pyc matches /usr/lib/python3.5/xml/dom/xmlbuilder.py
# code object from '/usr/lib/python3.5/xml/dom/__pycache__/xmlbuilder.cpython-35.pyc'
# /usr/lib/python3.5/xml/dom/__pycache__/NodeFilter.cpython-35.pyc matches /usr/lib/python3.5/xml/dom/NodeFilter.py
# code object from '/usr/lib/python3.5/xml/dom/__pycache__/NodeFilter.cpython-35.pyc'
import 'xml.dom.NodeFilter' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779618e710>
import 'xml.dom.xmlbuilder' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779617bc18>
import 'xml.dom.minidom' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779681acf8>
# /usr/lib/python3.5/xml/parsers/__pycache__/__init__.cpython-35.pyc matches /usr/lib/python3.5/xml/parsers/__init__.py
# code object from '/usr/lib/python3.5/xml/parsers/__pycache__/__init__.cpython-35.pyc'
import 'xml.parsers' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779618efd0>
# /usr/lib/python3.5/xml/parsers/__pycache__/expat.cpython-35.pyc matches /usr/lib/python3.5/xml/parsers/expat.py
# code object from '/usr/lib/python3.5/xml/parsers/__pycache__/expat.cpython-35.pyc'
import 'pyexpat' # <class '_frozen_importlib.BuiltinImporter'>
import 'xml.parsers.expat' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77961a50f0>
# /usr/lib/python3.5/urllib/__pycache__/__init__.cpython-35.pyc matches /usr/lib/python3.5/urllib/__init__.py
# code object from '/usr/lib/python3.5/urllib/__pycache__/__init__.cpython-35.pyc'
import 'urllib' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77961a5470>
# /usr/lib/python3.5/urllib/__pycache__/error.cpython-35.pyc matches /usr/lib/python3.5/urllib/error.py
# code object from '/usr/lib/python3.5/urllib/__pycache__/error.cpython-35.pyc'
# /usr/lib/python3.5/urllib/__pycache__/response.cpython-35.pyc matches /usr/lib/python3.5/urllib/response.py
# code object from '/usr/lib/python3.5/urllib/__pycache__/response.cpython-35.pyc'
import 'urllib.response' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77961a5a20>
import 'urllib.error' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77961a5550>
# /usr/lib/python3.5/urllib/__pycache__/request.cpython-35.pyc matches /usr/lib/python3.5/urllib/request.py
# code object from '/usr/lib/python3.5/urllib/__pycache__/request.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/base64.cpython-35.pyc matches /usr/lib/python3.5/base64.py
# code object from '/usr/lib/python3.5/__pycache__/base64.cpython-35.pyc'
import 'binascii' # <class '_frozen_importlib.BuiltinImporter'>
import 'base64' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779614e7f0>
# /usr/lib/python3.5/__pycache__/bisect.cpython-35.pyc matches /usr/lib/python3.5/bisect.py
# code object from '/usr/lib/python3.5/__pycache__/bisect.cpython-35.pyc'
import '_bisect' # <class '_frozen_importlib.BuiltinImporter'>
import 'bisect' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7796153908>
# /usr/lib/python3.5/email/__pycache__/__init__.cpython-35.pyc matches /usr/lib/python3.5/email/__init__.py
# code object from '/usr/lib/python3.5/email/__pycache__/__init__.cpython-35.pyc'
import 'email' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77961538d0>
# /usr/lib/python3.5/http/__pycache__/__init__.cpython-35.pyc matches /usr/lib/python3.5/http/__init__.py
# code object from '/usr/lib/python3.5/http/__pycache__/__init__.cpython-35.pyc'
import 'http' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7796153cf8>
# /usr/lib/python3.5/http/__pycache__/client.cpython-35.pyc matches /usr/lib/python3.5/http/client.py
# code object from '/usr/lib/python3.5/http/__pycache__/client.cpython-35.pyc'
# /usr/lib/python3.5/email/__pycache__/parser.cpython-35.pyc matches /usr/lib/python3.5/email/parser.py
# code object from '/usr/lib/python3.5/email/__pycache__/parser.cpython-35.pyc'
# /usr/lib/python3.5/email/__pycache__/feedparser.cpython-35.pyc matches /usr/lib/python3.5/email/feedparser.py
# code object from '/usr/lib/python3.5/email/__pycache__/feedparser.cpython-35.pyc'
# /usr/lib/python3.5/email/__pycache__/errors.cpython-35.pyc matches /usr/lib/python3.5/email/errors.py
# code object from '/usr/lib/python3.5/email/__pycache__/errors.cpython-35.pyc'
import 'email.errors' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77960f79e8>
# /usr/lib/python3.5/email/__pycache__/message.cpython-35.pyc matches /usr/lib/python3.5/email/message.py
# code object from '/usr/lib/python3.5/email/__pycache__/message.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/uu.cpython-35.pyc matches /usr/lib/python3.5/uu.py
# code object from '/usr/lib/python3.5/__pycache__/uu.cpython-35.pyc'
import 'uu' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7796116198>
# /usr/lib/python3.5/__pycache__/quopri.cpython-35.pyc matches /usr/lib/python3.5/quopri.py
# code object from '/usr/lib/python3.5/__pycache__/quopri.cpython-35.pyc'
import 'quopri' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77961162e8>
# /usr/lib/python3.5/email/__pycache__/utils.cpython-35.pyc matches /usr/lib/python3.5/email/utils.py
# code object from '/usr/lib/python3.5/email/__pycache__/utils.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/socket.cpython-35.pyc matches /usr/lib/python3.5/socket.py
# code object from '/usr/lib/python3.5/__pycache__/socket.cpython-35.pyc'
import '_socket' # <class '_frozen_importlib.BuiltinImporter'>
import 'socket' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779611e978>
# /usr/lib/python3.5/__pycache__/datetime.cpython-35.pyc matches /usr/lib/python3.5/datetime.py
# code object from '/usr/lib/python3.5/__pycache__/datetime.cpython-35.pyc'
import '_datetime' # <class '_frozen_importlib.BuiltinImporter'>
import 'datetime' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779611ef60>
# /usr/lib/python3.5/urllib/__pycache__/parse.cpython-35.pyc matches /usr/lib/python3.5/urllib/parse.py
# code object from '/usr/lib/python3.5/urllib/__pycache__/parse.cpython-35.pyc'
import 'urllib.parse' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7796129cf8>
# /usr/lib/python3.5/email/__pycache__/_parseaddr.cpython-35.pyc matches /usr/lib/python3.5/email/_parseaddr.py
# code object from '/usr/lib/python3.5/email/__pycache__/_parseaddr.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/calendar.cpython-35.pyc matches /usr/lib/python3.5/calendar.py
# code object from '/usr/lib/python3.5/__pycache__/calendar.cpython-35.pyc'
import 'calendar' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77960e2b38>
import 'email._parseaddr' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77960e0208>
# /usr/lib/python3.5/email/__pycache__/charset.cpython-35.pyc matches /usr/lib/python3.5/email/charset.py
# code object from '/usr/lib/python3.5/email/__pycache__/charset.cpython-35.pyc'
# /usr/lib/python3.5/email/__pycache__/base64mime.cpython-35.pyc matches /usr/lib/python3.5/email/base64mime.py
# code object from '/usr/lib/python3.5/email/__pycache__/base64mime.cpython-35.pyc'
import 'email.base64mime' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779608a668>
# /usr/lib/python3.5/email/__pycache__/quoprimime.cpython-35.pyc matches /usr/lib/python3.5/email/quoprimime.py
# code object from '/usr/lib/python3.5/email/__pycache__/quoprimime.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/string.cpython-35.pyc matches /usr/lib/python3.5/string.py
# code object from '/usr/lib/python3.5/__pycache__/string.cpython-35.pyc'
import '_string' # <class '_frozen_importlib.BuiltinImporter'>
import 'string' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779608af60>
import 'email.quoprimime' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779608a898>
# /usr/lib/python3.5/email/__pycache__/encoders.cpython-35.pyc matches /usr/lib/python3.5/email/encoders.py
# code object from '/usr/lib/python3.5/email/__pycache__/encoders.cpython-35.pyc'
import 'email.encoders' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779609d128>
import 'email.charset' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779607fac8>
import 'email.utils' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77961168d0>
# /usr/lib/python3.5/email/__pycache__/_policybase.cpython-35.pyc matches /usr/lib/python3.5/email/_policybase.py
# code object from '/usr/lib/python3.5/email/__pycache__/_policybase.cpython-35.pyc'
# /usr/lib/python3.5/email/__pycache__/header.cpython-35.pyc matches /usr/lib/python3.5/email/header.py
# code object from '/usr/lib/python3.5/email/__pycache__/header.cpython-35.pyc'
import 'email.header' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779609da20>
import 'email._policybase' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779611e828>
# /usr/lib/python3.5/email/__pycache__/_encoded_words.cpython-35.pyc matches /usr/lib/python3.5/email/_encoded_words.py
# code object from '/usr/lib/python3.5/email/__pycache__/_encoded_words.cpython-35.pyc'
import 'email._encoded_words' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77960a9b38>
# /usr/lib/python3.5/email/__pycache__/iterators.cpython-35.pyc matches /usr/lib/python3.5/email/iterators.py
# code object from '/usr/lib/python3.5/email/__pycache__/iterators.cpython-35.pyc'
import 'email.iterators' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7796033240>
import 'email.message' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77960f7b00>
import 'email.feedparser' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7796169c50>
import 'email.parser' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7796169860>
# /usr/lib/python3.5/__pycache__/ssl.cpython-35.pyc matches /usr/lib/python3.5/ssl.py
# code object from '/usr/lib/python3.5/__pycache__/ssl.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/ipaddress.cpython-35.pyc matches /usr/lib/python3.5/ipaddress.py
# code object from '/usr/lib/python3.5/__pycache__/ipaddress.cpython-35.pyc'
import 'ipaddress' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7796044780>
# /usr/lib/python3.5/__pycache__/textwrap.cpython-35.pyc matches /usr/lib/python3.5/textwrap.py
# code object from '/usr/lib/python3.5/__pycache__/textwrap.cpython-35.pyc'
import 'textwrap' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7796061cf8>
# extension module '_ssl' loaded from '/usr/lib/python3.5/lib-dynload/_ssl.cpython-35m-x86_64-linux-gnu.so'
# extension module '_ssl' executed from '/usr/lib/python3.5/lib-dynload/_ssl.cpython-35m-x86_64-linux-gnu.so'
import '_ssl' # <_frozen_importlib_external.ExtensionFileLoader object at 0x7f77960b1da0>
import 'ssl' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77960336d8>
import 'http.client' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779615e160>
import 'urllib.request' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77961ab2e8>
# /usr/lib/python3/dist-packages/__pycache__/problem_report.cpython-35.pyc matches /usr/lib/python3/dist-packages/problem_report.py
# code object from '/usr/lib/python3/dist-packages/__pycache__/problem_report.cpython-35.pyc'
import 'zlib' # <class '_frozen_importlib.BuiltinImporter'>
# /usr/lib/python3.5/__pycache__/gzip.cpython-35.pyc matches /usr/lib/python3.5/gzip.py
# code object from '/usr/lib/python3.5/__pycache__/gzip.cpython-35.pyc'
import 'gzip' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7795ff8d30>
# /usr/lib/python3.5/email/mime/__pycache__/__init__.cpython-35.pyc matches /usr/lib/python3.5/email/mime/__init__.py
# code object from '/usr/lib/python3.5/email/mime/__pycache__/__init__.cpython-35.pyc'
import 'email.mime' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7796012f28>
# /usr/lib/python3.5/email/mime/__pycache__/multipart.cpython-35.pyc matches /usr/lib/python3.5/email/mime/multipart.py
# code object from '/usr/lib/python3.5/email/mime/__pycache__/multipart.cpython-35.pyc'
# /usr/lib/python3.5/email/mime/__pycache__/base.cpython-35.pyc matches /usr/lib/python3.5/email/mime/base.py
# code object from '/usr/lib/python3.5/email/mime/__pycache__/base.cpython-35.pyc'
import 'email.mime.base' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779601b1d0>
import 'email.mime.multipart' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779601b080>
# /usr/lib/python3.5/email/mime/__pycache__/text.cpython-35.pyc matches /usr/lib/python3.5/email/mime/text.py
# code object from '/usr/lib/python3.5/email/mime/__pycache__/text.cpython-35.pyc'
# /usr/lib/python3.5/email/mime/__pycache__/nonmultipart.cpython-35.pyc matches /usr/lib/python3.5/email/mime/nonmultipart.py
# code object from '/usr/lib/python3.5/email/mime/__pycache__/nonmultipart.cpython-35.pyc'
import 'email.mime.nonmultipart' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779601b390>
import 'email.mime.text' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779601b198>
import 'problem_report' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779614e0b8>
# /usr/lib/python3/dist-packages/apport/__pycache__/fileutils.cpython-35.pyc matches /usr/lib/python3/dist-packages/apport/fileutils.py
# code object from '/usr/lib/python3/dist-packages/apport/__pycache__/fileutils.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/configparser.cpython-35.pyc matches /usr/lib/python3.5/configparser.py
# code object from '/usr/lib/python3.5/__pycache__/configparser.cpython-35.pyc'
import 'configparser' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779601beb8>
# /usr/lib/python3/dist-packages/apport/__pycache__/packaging_impl.cpython-35.pyc matches /usr/lib/python3/dist-packages/apport/packaging_impl.py
# code object from '/usr/lib/python3/dist-packages/apport/__pycache__/packaging_impl.cpython-35.pyc'
# /usr/lib/python3.5/json/__pycache__/__init__.cpython-35.pyc matches /usr/lib/python3.5/json/__init__.py
# code object from '/usr/lib/python3.5/json/__pycache__/__init__.cpython-35.pyc'
# /usr/lib/python3.5/json/__pycache__/decoder.cpython-35.pyc matches /usr/lib/python3.5/json/decoder.py
# code object from '/usr/lib/python3.5/json/__pycache__/decoder.cpython-35.pyc'
# /usr/lib/python3.5/json/__pycache__/scanner.cpython-35.pyc matches /usr/lib/python3.5/json/scanner.py
# code object from '/usr/lib/python3.5/json/__pycache__/scanner.cpython-35.pyc'
# extension module '_json' loaded from '/usr/lib/python3.5/lib-dynload/_json.cpython-35m-x86_64-linux-gnu.so'
# extension module '_json' executed from '/usr/lib/python3.5/lib-dynload/_json.cpython-35m-x86_64-linux-gnu.so'
import '_json' # <_frozen_importlib_external.ExtensionFileLoader object at 0x7f7795b4c7b8>
import 'json.scanner' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7795b4c470>
import 'json.decoder' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7795b46d68>
# /usr/lib/python3.5/json/__pycache__/encoder.cpython-35.pyc matches /usr/lib/python3.5/json/encoder.py
# code object from '/usr/lib/python3.5/json/__pycache__/encoder.cpython-35.pyc'
import 'json.encoder' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7795b4c2e8>
import 'json' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7795b46ac8>
# /usr/lib/python3/dist-packages/apt/__pycache__/__init__.cpython-35.pyc matches /usr/lib/python3/dist-packages/apt/__init__.py
# code object from '/usr/lib/python3/dist-packages/apt/__pycache__/__init__.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/__future__.cpython-35.pyc matches /usr/lib/python3.5/__future__.py
# code object from '/usr/lib/python3.5/__pycache__/__future__.cpython-35.pyc'
import '__future__' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7795b57978>
# extension module 'apt_pkg' loaded from '/usr/lib/python3/dist-packages/apt_pkg.cpython-35m-x86_64-linux-gnu.so'
# extension module 'apt_pkg' executed from '/usr/lib/python3/dist-packages/apt_pkg.cpython-35m-x86_64-linux-gnu.so'
import 'apt_pkg' # <_frozen_importlib_external.ExtensionFileLoader object at 0x7f7795b57e10>
# /usr/lib/python3/dist-packages/apt/__pycache__/package.cpython-35.pyc matches /usr/lib/python3/dist-packages/apt/package.py
# code object from '/usr/lib/python3/dist-packages/apt/__pycache__/package.cpython-35.pyc'
# /usr/lib/python3/dist-packages/apt/progress/__pycache__/__init__.cpython-35.pyc matches /usr/lib/python3/dist-packages/apt/progress/__init__.py
# code object from '/usr/lib/python3/dist-packages/apt/progress/__pycache__/__init__.cpython-35.pyc'
import 'apt.progress' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7794964a58>
# /usr/lib/python3/dist-packages/apt/progress/__pycache__/text.cpython-35.pyc matches /usr/lib/python3/dist-packages/apt/progress/text.py
# code object from '/usr/lib/python3/dist-packages/apt/progress/__pycache__/text.cpython-35.pyc'
# /usr/lib/python3/dist-packages/apt/progress/__pycache__/base.cpython-35.pyc matches /usr/lib/python3/dist-packages/apt/progress/base.py
# code object from '/usr/lib/python3/dist-packages/apt/progress/__pycache__/base.cpython-35.pyc'
import 'fcntl' # <class '_frozen_importlib.BuiltinImporter'>
import 'apt.progress.base' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779496b5c0>
import 'apt.progress.text' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7794964be0>
import 'apt.package' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779494b550>
# /usr/lib/python3/dist-packages/apt/__pycache__/cache.cpython-35.pyc matches /usr/lib/python3/dist-packages/apt/cache.py
# code object from '/usr/lib/python3/dist-packages/apt/__pycache__/cache.cpython-35.pyc'
import 'apt.cache' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779495f588>
# /usr/lib/python3/dist-packages/apt/__pycache__/cdrom.cpython-35.pyc matches /usr/lib/python3/dist-packages/apt/cdrom.py
# code object from '/usr/lib/python3/dist-packages/apt/__pycache__/cdrom.cpython-35.pyc'
import 'apt.cdrom' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7794982b38>
import 'apt' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7795b577b8>
# /usr/lib/python3.5/__pycache__/pickle.cpython-35.pyc matches /usr/lib/python3.5/pickle.py
# code object from '/usr/lib/python3.5/__pycache__/pickle.cpython-35.pyc'
# /usr/lib/python3.5/__pycache__/_compat_pickle.cpython-35.pyc matches /usr/lib/python3.5/_compat_pickle.py
# code object from '/usr/lib/python3.5/__pycache__/_compat_pickle.cpython-35.pyc'
import '_compat_pickle' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77970eee10>
import '_pickle' # <class '_frozen_importlib.BuiltinImporter'>
import 'pickle' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7795b57860>
# /usr/lib/python3/dist-packages/apport/__pycache__/packaging.cpython-35.pyc matches /usr/lib/python3/dist-packages/apport/packaging.py
# code object from '/usr/lib/python3/dist-packages/apport/__pycache__/packaging.cpython-35.pyc'
import 'apport.packaging' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77970eeba8>
import 'apport.packaging_impl' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7795b35be0>
import 'apport.fileutils' # <_frozen_importlib_external.SourceFileLoader object at 0x7f779601b5f8>
import 'apport.report' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7797185c88>
# /usr/lib/python3.5/__pycache__/gettext.cpython-35.pyc matches /usr/lib/python3.5/gettext.py
# code object from '/usr/lib/python3.5/__pycache__/gettext.cpython-35.pyc'
import 'gettext' # <_frozen_importlib_external.SourceFileLoader object at 0x7f7797100518>
import 'apport' # <_frozen_importlib_external.SourceFileLoader object at 0x7f77971790f0>
Traceback (most recent call last):
File "", line 1, in
NameError: name 'clear' is not defined

Neelam[Val] vi ~/.bashrc []

I am working on a new genome, and wondering about prediction methods for heterozygosity in the genome. Any tools suggestions and helps are welcome. 

whatshap phase -o seeWhat.vcf --reference genome.fa see.vcf genome.fa.sorted.bam

This is WhatsHap 0.17 running under Python 3.6.6
Traceback (most recent call last):
File "/home/anaconda3/bin/whatshap", line 11, in <module>
load_entry_point('whatshap==0.17', 'console_scripts', 'whatshap')()
File "/home/anaconda3/lib/python3.6/site-packages/whatshap/__main__.py", line 83, in main
module.main(args)
File "/home/anaconda3/lib/python3.6/site-packages/whatshap/phase.py", line 1089, in main
run_whatshap(**vars(args))
File "/home/anaconda3/lib/python3.6/site-packages/whatshap/phase.py", line 580, in run_whatshap
out_file=output, tag=tag)
File "/home/anaconda3/lib/python3.6/site-packages/whatshap/vcf.py", line 478, in __init__
self._reader = vcf.Reader(filename=in_path)
File "/home/anaconda3/lib/python3.6/site-packages/vcf/parser.py", line 300, in __init__
self._parse_metainfo()
File "/home/anaconda3/lib/python3.6/site-packages/vcf/parser.py", line 317, in _parse_metainfo
line = next(self.reader)
File "/home/anaconda3/lib/python3.6/site-packages/vcf/parser.py", line 280, in <genexpr>
self.reader = (line.strip() for line in self._reader if line.strip())
File "/home/anaconda3/lib/python3.6/codecs.py", line 321, in decode
(result, consumed) = self._buffer_decode(data, self.errors, final)
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte

How to fix this error ? 

➜ OligoMiner git:(master) conda create --name probeMining numpy scipy biopython scikit-learn
Solving environment: done

## Package Plan ##

environment location: /home/urbe/anaconda3/envs/probeMining

added / updated specs:
- biopython
- numpy
- scikit-learn
- scipy

The following packages will be downloaded:

package | build
---------------------------|-----------------
numpy-1.15.2 |py27_blas_openblashd3ea46f_1 4.2 MB conda-forge
python-2.7.15 | h33da82c_4 13.6 MB conda-forge
reportlab-3.5.9 | py27h77bcf2c_0 2.5 MB conda-forge
scikit-learn-0.20.0 |py27_blas_openblasha84fab4_201 13.5 MB conda-forge
biopython-1.68 | py27_0 2.5 MB bioconda
certifi-2018.10.15 | py27_1000 138 KB conda-forge
msgpack-python-0.5.6 | py27h2d50403_3 101 KB conda-forge
libpng-1.6.35 | ha92aebf_2 305 KB conda-forge
blas-1.1 | openblas 1 KB conda-forge
libtiff-4.0.9 | he6b73bb_2 521 KB conda-forge
openblas-0.2.20 | 8 17.0 MB conda-forge
mmtf-python-1.0.2 | py27_0 34 KB bioconda
scipy-1.1.0 |py27_blas_openblash7943236_201 39.4 MB conda-forge
olefile-0.46 | py_0 31 KB conda-forge
pillow-5.3.0 | py27hc736899_0 603 KB conda-forge
------------------------------------------------------------
Total: 94.3 MB

The following NEW packages will be INSTALLED:

biopython: 1.68-py27_0 bioconda
blas: 1.1-openblas conda-forge
ca-certificates: 2018.10.15-ha4d7672_0 conda-forge
certifi: 2018.10.15-py27_1000 conda-forge
freetype: 2.9.1-h6debe1e_4 conda-forge
jpeg: 9c-h470a237_1 conda-forge
libffi: 3.2.1-hfc679d8_5 conda-forge
libgcc-ng: 7.2.0-hdf63c60_3 conda-forge
libgfortran: 3.0.0-1 conda-forge
libpng: 1.6.35-ha92aebf_2 conda-forge
libstdcxx-ng: 7.2.0-hdf63c60_3 conda-forge
libtiff: 4.0.9-he6b73bb_2 conda-forge
mmtf-python: 1.0.2-py27_0 bioconda
msgpack-python: 0.5.6-py27h2d50403_3 conda-forge
ncurses: 6.1-hfc679d8_1 conda-forge
numpy: 1.15.2-py27_blas_openblashd3ea46f_1 conda-forge [blas_openblas]
olefile: 0.46-py_0 conda-forge
openblas: 0.2.20-8 conda-forge
openssl: 1.0.2p-h470a237_1 conda-forge
pillow: 5.3.0-py27hc736899_0 conda-forge
pip: 18.1-py27_1000 conda-forge
python: 2.7.15-h33da82c_4 conda-forge
readline: 7.0-haf1bffa_1 conda-forge
reportlab: 3.5.9-py27h77bcf2c_0 conda-forge
scikit-learn: 0.20.0-py27_blas_openblasha84fab4_201 conda-forge [blas_openblas]
scipy: 1.1.0-py27_blas_openblash7943236_201 conda-forge [blas_openblas]
setuptools: 40.4.3-py27_0 conda-forge
sqlite: 3.25.2-hb1c47c0_0 conda-forge
tk: 8.6.8-ha92aebf_0 conda-forge
wheel: 0.32.1-py27_0 conda-forge
xz: 5.2.4-h470a237_1 conda-forge
zlib: 1.2.11-h470a237_3 conda-forge

Proceed ([y]/n)? y

Downloading and Extracting Packages
numpy-1.15.2 | 4.2 MB | ##################################### | 100%
python-2.7.15 | 13.6 MB | ##################################### | 100%
reportlab-3.5.9 | 2.5 MB | ##################################### | 100%
scikit-learn-0.20.0 | 13.5 MB | ##################################### | 100%
biopython-1.68 | 2.5 MB | ##################################### | 100%
certifi-2018.10.15 | 138 KB | ##################################### | 100%
msgpack-python-0.5.6 | 101 KB | ##################################### | 100%
libpng-1.6.35 | 305 KB | ##################################### | 100%
blas-1.1 | 1 KB | ##################################### | 100%
libtiff-4.0.9 | 521 KB | ##################################### | 100%
openblas-0.2.20 | 17.0 MB | ##################################### | 100%
mmtf-python-1.0.2 | 34 KB | ##################################### | 100%
scipy-1.1.0 | 39.4 MB | ##################################### | 100%
olefile-0.46 | 31 KB | ##################################### | 100%
pillow-5.3.0 | 603 KB | ##################################### | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
#
# To activate this environment, use
#
# $ conda activate probeMining
#
# To deactivate an active environment, use
#
# $ conda deactivate

➜ OligoMiner git:(master) conda activate probeMining

CommandNotFoundError: Your shell has not been properly configured to use 'conda activate'.
If your shell is Bash or a Bourne variant, enable conda for the current user with

$ echo ". /home/urbe/anaconda3/etc/profile.d/conda.sh" >> ~/.bashrc

or, for all users, enable conda with

$ sudo ln -s /home/urbe/anaconda3/etc/profile.d/conda.sh /etc/profile.d/conda.sh

The options above will permanently enable the 'conda' command, but they do NOT
put conda's base (root) environment on PATH. To do so, run

$ conda activate

in your terminal, or to put the base environment on PATH permanently, run

$ echo "conda activate" >> ~/.bashrc

Previous to conda 4.4, the recommended way to activate conda was to modify PATH in
your ~/.bashrc file. You should manually remove the line that looks like

export PATH="/home/urbe/anaconda3/bin:$PATH"

^^^ The above line should NO LONGER be in your ~/.bashrc file! ^^^

I receive this error while mapping with BWA MEM ! How to fix it ?

3C: chromosome conformation capture

4C:chromosome conformation capture-on-chip

5C : chromosome conformation capture carbon copy

While mapping minimap2 return following warning:

[WARNING] For a multi-part index, no @SQ lines will be outputted.

How to resolve it. 

I am working on a metazoan genome. I wanted to try the best known method to validate the assembly structure. Your suggestions are welcome.