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Abhi on LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data (636 days ago): Detail paper here https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8111061/- BioStar on Perl Module Installation (1092 days ago): To install BioPerl on a macOS system, you can follow these steps: Open the...
- Abhi on CovCal: Coverage / Read Count Calculator (1253 days ago): Sequencing coverage is defined as the average number of reads that covers...
- Neel on CheckM:Assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes (1305 days ago): MOre at https://bitbucket.org/berkeleylab/checkv/src/master/
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Visualise blast results !
By Abhi 1242 days agokablammo.wasmuthlab.org - Kablammo helps you create interactive visualizations of BLAST results from your web browser. Find your most interesting alignments, list detailed parameters for each, and export a publication-ready vector image, all without installing any...Covid Spectrum !
By Abhi 1257 days agohttps://cov-spectrum.org/ - https://cov-spectrum.org/explore/World/AllSamples/ CoV-Spectrum supports a wide range of search queries. The following sections presents search options of the basic search bar. For information on the advanced searchCovid Spectrum !
By Abhi 1257 days agohttps://cov-spectrum.org/ - https://cov-spectrum.org/explore/World/AllSamples/ CoV-Spectrum supports a wide range of search queries. The following sections presents search options of the basic search bar. For information on the advanced searchCovid Spectrum !
By Abhi 1257 days agohttps://cov-spectrum.org/ - https://cov-spectrum.org/explore/World/AllSamples/Executing Snakemake
By Abhi 1257 days agosnakemake.readthedocs.io - This part of the documentation describes the snakemake executable. Snakemake is primarily a command-line tool, so the snakemake executable is the primary way to execute, debug, and visualize...gfastats: The swiss army knife for genome assembly.
By Abhi 1275 days agogithub.com - gfastats is a single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation. gfastats also allows seamless fasta<>fastq<>gfa[.gz]...Elastic BLAST !
By Abhi 1276 days agoblast.ncbi.nlm.nih.gov - ElasticBLAST is a new way to BLAST large numbers of queries, faster and on the cloud. Here are the top three reasons you should use ElasticBLAST: 1. ElasticBLAST can handle much LARGER queries! ElasticBLAST can search query...Bioinformatics Tutorial !
By Neel 1291 days agoastrobiomike.github.io - This site aims to be a useful resource for bioinformatics beginners. Feel free to jump right in with the section most relevant to you, and if you're not sure, then the place to start is definitely UnixauN: a new metric to measure assembly contiguity
By Jit 1312 days agolh3.github.io - Given a de novo assembly, we often measure the “average” contig length by N50. N50 is neither the real average nor median. It is the length of the contig such that this and longer contigs cover at least 50% of the assembly. A...Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome
By Jit 1319 days agowww.ncbi.nlm.nih.gov - LOCUS ON563414 197205 bp DNA linear VRL 30-MAY-2022 DEFINITION Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome. ACCESSION ON563414 VERSION ON563414.3 KEYWORDS . SOURCE Monkeypox virus...
