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Neel on Fix rewritable error of ELGG ! (959 days ago): sudo systemctl restart apache2 Now, create...- Shruti Paniwala on LASTZ (3100 days ago): The latest relase of LastZ at http://www.bx.psu.edu/~rsharris/lastz/newer/
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genomenotebook
By Abhi 629 days agodbikard.github.io - https://dbikard.github.io/genomenotebook/ Install pip install genomenotebook How to use Create a simple genome browser with a search bar. The sequence appears when zooming in. import genomenotebook as gn g=gn.GenomeBrowser(genome_path,...Visualise blast results !
By Abhi 820 days agokablammo.wasmuthlab.org - Kablammo helps you create interactive visualizations of BLAST results from your web browser. Find your most interesting alignments, list detailed parameters for each, and export a publication-ready vector image, all without installing any...Covid Spectrum !
By Abhi 835 days agohttps://cov-spectrum.org/ - https://cov-spectrum.org/explore/World/AllSamples/ CoV-Spectrum supports a wide range of search queries. The following sections presents search options of the basic search bar. For information on the advanced searchCovid Spectrum !
By Abhi 835 days agohttps://cov-spectrum.org/ - https://cov-spectrum.org/explore/World/AllSamples/ CoV-Spectrum supports a wide range of search queries. The following sections presents search options of the basic search bar. For information on the advanced searchCovid Spectrum !
By Abhi 835 days agohttps://cov-spectrum.org/ - https://cov-spectrum.org/explore/World/AllSamples/Executing Snakemake
By Abhi 835 days agosnakemake.readthedocs.io - This part of the documentation describes the snakemake executable. Snakemake is primarily a command-line tool, so the snakemake executable is the primary way to execute, debug, and visualize...gfastats: The swiss army knife for genome assembly.
By Abhi 853 days agogithub.com - gfastats is a single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation. gfastats also allows seamless fasta<>fastq<>gfa[.gz]...Elastic BLAST !
By Abhi 854 days agoblast.ncbi.nlm.nih.gov - ElasticBLAST is a new way to BLAST large numbers of queries, faster and on the cloud. Here are the top three reasons you should use ElasticBLAST: 1. ElasticBLAST can handle much LARGER queries! ElasticBLAST can search query...oGNM:Conformational dynamics based on contact topology in a coarse-grained presentation
By Abhi 1087 days agodyn.life.nthu.edu.tw - Gaussian Network Model (GNM) is a powerful tool to sample conformational dynamics based on contact topology in a coarse-grained presentation. Here we present a method to consider protein dynamics in the presence of ‘environment’ (1). The...MimiLook: A Phylogenetic Workflow for Detection of Gene Acquisition in Major Orthologous Groups of...
By Abhi 1094 days agopubmed.ncbi.nlm.nih.gov - This tool detects statistically validated events of gene acquisitions with the help of the T-REX algorithm by comparing individual gene tree with NCBI species tree. In between the steps, the workflow decides about handling paralogs, filtering...
