BioStar
Bioinformatician
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- BioStar on Sibelia: A comparative genomics tool (1485 days ago): Basic usage =========== In this manual it is assumed that "Sibelia" is...
- BioStar on AutoDock Vina: an open-source program for doing molecular docking. (1622 days ago): AutoDockFR (or ADFR in short) is a protein-ligand docking...
- BioStar on AutoDock Vina: an open-source program for doing molecular docking. (1622 days ago): QVina-W, a new docking tool particularly useful for wide search space,...
- BioStar on Nextflow: Data-driven computational pipelines (1736 days ago): A Review of Scalable Bioinformatics Pipelines by Bjørn Fjukstad &...
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reads, genome, assembly, data, tool, sequence, sequencing, analysis, package, pipeline, genomic, Correction, Gene, Illumina, Breeding, Bioinformatics, Automated, learn, sequences, accurate, web, program, R, DNA, long, server, tools, alignment, Annotation, metagenomics, genomes, Visualization, error, ngs, PacBio, Ontology, RNA, biological, generation, open-source, software, Genomics, Hi-C, RNA-seq, tree, python, Training, identification, genes, free
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BioStar's bookmarks
GenoFig: a user-friendly application for the visualization and comparison of genomic regions
By BioStar 108 days agoforgemia.inra.fr - Tool for graphical vizualisation of annotated genetic regions, and homologous regions comparison. It is an independent recoding of Easyfig 2 initially developped by at the S. Beatson Lab [https://mjsull.github.io/Easyfig/] Download the GenoFig...UnCoVar: Workflow for Transparent and Robust Virus Variant Calling, Genome Reconstruction and...
By BioStar 108 days agoikim-essen.github.io - UnCoVar: Workflow for Transparent and Robust Virus Variant Calling, Genome Reconstruction and Lineage Assignment Using state of the art tools, easily extended for other viruses Tool and database updates for critical components via...Free resources to learn statistics
By BioStar 138 days agoonline.stat.psu.edu - Welcome to the course notes for STAT 414: Introduction to Probability Theory. These notes are designed and developed by Penn State's Department of Statistics and offered as open educational resources. These notes are free to use under...P10K: The Protist 10,000 Genomes
By BioStar 138 days agongdc.cncb.ac.cn - The Protist 10,000 Genomes (P10K) Project aims to decipher the genome sequences and construct a comprehensive database resource containing over 10,000 species of protists, encompassing representatives from every major clade. Samples were collected...iMAGine - in silico MetAGenomics pipeline
By BioStar 138 days agogithub.com - iMAGine is a metagenomic workflow which includes filtering, assembling, and binning. This workflow includes the following tools which are needed to be installed in the system. fastp spades assembler QUAST bwa samtools metabat2 CheckMSqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
By BioStar 138 days agogithub.com - SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. SqueezeMeta includes multi-metagenome support allowing the co-assembly of related metagenomes and the retrieval of individual genomes...BEAR: Better Emulation for Artificial Reads
By BioStar 138 days agogithub.com - Created by Stephen Johnson, Brett Trost, Dr. Jeffrey R. Long, Dr. Anthony Kusalik University of Saskatchewan, Department of Computer Science BEAR is intended to be an easy-to-use collection of scripts for generating simulated WGS metagenomic reads...YAMP: Yet Another Metagenomic Pipeline
By BioStar 138 days agogithub.com - YAMP is constructed on Nextflow, a framework based on the dataflow programming model, which allows writing workflows that are highly parallel, easily portable (including on distributed systems), and very flexible and customisable,...sourmash: Quickly search, compare, and analyze genomic and metagenomic data sets.
By BioStar 138 days agogithub.com - sourmash is a k-mer analysis multitool, and we aim to provide stable, robust programmatic and command-line APIs for a variety of sequence comparisons. Some of our special sauce includes: FracMinHash sketching, which enables accurate...Lorikeet: Strain resolver for metagenomics
By BioStar 138 days agogithub.com - Lorikeet is a within-species variant analysis pipeline for metagenomic communities that utilizes both long and short reads. Lorikeet utilizes a re-implementaion of the GATK HaplotypeCaller algorithm, performing local re-assembly of potentially...
