BioStar
Bioinformatician
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- BioStar on Sibelia: A comparative genomics tool (1955 days ago): Basic usage =========== In this manual it is assumed that "Sibelia" is...
- BioStar on AutoDock Vina: an open-source program for doing molecular docking. (2092 days ago): AutoDockFR (or ADFR in short) is a protein-ligand docking...
- BioStar on AutoDock Vina: an open-source program for doing molecular docking. (2092 days ago): QVina-W, a new docking tool particularly useful for wide search space,...
- BioStar on Nextflow: Data-driven computational pipelines (2206 days ago): A Review of Scalable Bioinformatics Pipelines by Bjørn Fjukstad &...
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reads, genome, assembly, data, tool, sequence, sequencing, genomic, analysis, package, pipeline, Correction, Gene, Illumina, Breeding, Bioinformatics, Automated, learn, web, alignment, sequences, accurate, program, R, DNA, long, server, tools, Annotation, metagenomics, genomes, Visualization, graph, error, ngs, PacBio, Ontology, RNA, biological, generation, open-source, software, Genomics, Hi-C, RNA-seq, tree, python, Training, identification, genes
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BioStar's bookmarks
SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
By BioStar 608 days agogithub.com - SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. SqueezeMeta includes multi-metagenome support allowing the co-assembly of related metagenomes and the retrieval of individual genomes...BEAR: Better Emulation for Artificial Reads
By BioStar 608 days agogithub.com - Created by Stephen Johnson, Brett Trost, Dr. Jeffrey R. Long, Dr. Anthony Kusalik University of Saskatchewan, Department of Computer Science BEAR is intended to be an easy-to-use collection of scripts for generating simulated WGS metagenomic reads...YAMP: Yet Another Metagenomic Pipeline
By BioStar 608 days agogithub.com - YAMP is constructed on Nextflow, a framework based on the dataflow programming model, which allows writing workflows that are highly parallel, easily portable (including on distributed systems), and very flexible and customisable,...sourmash: Quickly search, compare, and analyze genomic and metagenomic data sets.
By BioStar 608 days agogithub.com - sourmash is a k-mer analysis multitool, and we aim to provide stable, robust programmatic and command-line APIs for a variety of sequence comparisons. Some of our special sauce includes: FracMinHash sketching, which enables accurate...Lorikeet: Strain resolver for metagenomics
By BioStar 608 days agogithub.com - Lorikeet is a within-species variant analysis pipeline for metagenomic communities that utilizes both long and short reads. Lorikeet utilizes a re-implementaion of the GATK HaplotypeCaller algorithm, performing local re-assembly of potentially...DRAM: Distilled and Refined Annotation of Metabolism
By BioStar 608 days agogithub.com - DRAM (Distilled and Refined Annotation of Metabolism) is a tool for annotating metagenomic assembled genomes and VirSorter identified viral contigs. DRAM annotates MAGs and viral contigs using KEGG (if provided by the...A web-based tool for sequence alignment statistics and innovative visualization
By BioStar 701 days agobioinformatics.um6p.ma - AlignStatPlot, a new R package and online tool that is well-documented and easy-to usefor MSA and post-MSA analysis. This tool performs both traditional and cutting-edge analy-ses on sequencing data and generates new visualisation methods for MSA...bacLIFE: an automated genome mining tool for identification of lifestyle associated genes
By BioStar 721 days agogithub.com - bacLIFE is a streamlined computational workflow that annotates bacterial genomes and performs large-scale comparative genomics to predict bacterial lifestyles and to pinpoint candidate genes, denominated lifestyle-associated genes (LAGs), and...Programming for Lovers !
By BioStar 849 days agoprogrammingforlovers.com - Programming for Lovers (P4❤️) is a free online course that teaches programming using the Go programming language by immersing learners in fun scientific applications. Each chapter focuses on a single scientific problem and contains a core text...Creating Genetic Maps from GBS data
By BioStar 910 days agobioinformaticsworkbook.org - Genetic map, as the name suggest is simply knowing the relative positions of specific sequences across the genome. There are various methods to generate them, but most popular method is to use a cross between the known parents and examining their...
