BioStar
Bioinformatician
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- BioStar on Sibelia: A comparative genomics tool (1485 days ago): Basic usage =========== In this manual it is assumed that "Sibelia" is...
- BioStar on AutoDock Vina: an open-source program for doing molecular docking. (1622 days ago): AutoDockFR (or ADFR in short) is a protein-ligand docking...
- BioStar on AutoDock Vina: an open-source program for doing molecular docking. (1622 days ago): QVina-W, a new docking tool particularly useful for wide search space,...
- BioStar on Nextflow: Data-driven computational pipelines (1736 days ago): A Review of Scalable Bioinformatics Pipelines by Bjørn Fjukstad &...
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reads, genome, assembly, data, tool, sequence, sequencing, analysis, package, pipeline, genomic, Correction, Gene, Illumina, Breeding, Bioinformatics, Automated, learn, sequences, accurate, web, program, R, DNA, long, server, tools, alignment, Annotation, metagenomics, genomes, Visualization, error, ngs, PacBio, Ontology, RNA, biological, generation, open-source, software, Genomics, Hi-C, RNA-seq, tree, python, Training, identification, genes, free
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BioStar's bookmarks
ALE: Assembly Likelihood Estimator
By BioStar 624 days agogithub.com - Just import the assembly, bam and ALE scores. You can convert the .ale file to a set of .wig files with ale2wiggle.py and IGV can read those directly. Depending on your genome size you may want to convert the .wig files to the BigWig format.Circos visualization !
By BioStar 626 days agowlcb.oit.uci.edu - Circos visualization https://wlcb.oit.uci.edu/modules/index.htmlHeatmap Draw !
By BioStar 626 days agosoftware.broadinstitute.org - Server for heatmap generation ! https://software.broadinstitute.org/morpheus/Bioinformatics Training Collections !
By BioStar 627 days agogithub.com - Useful list of bioinformatics training collections @ https://github.com/sib-swiss/training-collectionPython Mini Projects !
By BioStar 675 days agogithub.com - There is a directory for each chapter of the book. Each directory contains a test.py program you can use with pytest to check that you have written the program correctly. I have included a short README to describe each exercise....MPXV Bookmarks
By BioStar 703 days agowww.cdc.gov - MPVX infection across the globe https://www.cdc.gov/poxvirus/monkeypox/response/2022/world-map.htmlHairSplitter: assembling long reads in an unknown number of haplotypes
By BioStar 715 days agohal.archives-ouvertes.fr - Pros and cons of HairSplitter Limitations of HairSplitter: Not very fast: it re-polishes the whole assembly Limited in the number of haplotypes Strengths of HairSplitter: Very modular, can be used with any assembler Naive: makes no...Environmental Genomics Group SciLifeLab/KTH Stockholm
By BioStar 721 days agohttps://github.com/envgen - Useful Metagenomics resourcesOneZoom tree of life explorer...
By BioStar 740 days agohttps://www.onezoom.org/ - An interactive map of the evolutionary links between all living things known to science. Discover your favourites, see which species are under threat, and be amazed by the diversity of life on earth.
