Neel
Bioinformatics Beginner
Latest comments
- Abhi on LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data (637 days ago): Detail paper here https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8111061/
- LEGE on Coronavirus Resources ! (1632 days ago): The US government SARS-CoV-2 Interagency Group (SIG) developed a...
- LEGE on Coronavirus Resources ! (1633 days ago): Illumina toolkit for...
- Surabhi Chaudhary on Coronavirus Resources ! (1715 days ago): Some important resources here https://artic.network/ncov-2019
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Genome, Bioinformatics, NGS, Assembly, Tool, Reads, Sequence, data, Tutorial, Plot, Analysis, Software, Pipeline, package, Alignment, R, sequencing, Tools, Sequences, structural, docking, DNA, virus, find, Annotation, Comparative, Genomics, variant, BAM, Perl, nanopore, program, CoVID, fast, accurate, visualize, rna, PacBio, SNP, Learn, Visualization, user-friendly, Assemblies, Gene, files, FASTQ, genomic, Mapping, Stats, CISA
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Neel's bookmarks
AnchorWave
By Neel 1473 days agogithub.com - AnchorWave (Anchored Wavefront Alignment) identifies collinear regions via conserved anchors (full-length CDS and full-length exon have been implemented currently) and breaks collinear regions into shorter fragments, i.e., anchor and inter-anchor...Comparative genomics visualisation tools !
By Neel 1479 days agocmdcolin.github.io - Comparative genomics visualisation tools !GenomeTools: The versatile open source genome analysis software
By Neel 1494 days agohttp://genometools.org/ - The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is based on a C library named...MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
By Neel 1558 days agogithub.com - MitoZ, consisting of independent modules of de novo assembly, findMitoScaf (find Mitochondrial Scaffolds), annotation and visualization, that can generate mitogenome assembly together with annotation and visualization results from HTS raw...VolcaNoseR - Exploring volcano plots
By Neel 1619 days agohuygens.science.uva.nl - Plot volcano plots online .... VolcaNoseR - Exploring volcano plotsWAAFLE: a Workflow to Annotate Assemblies and Find LGT Events.
By Neel 1626 days agohuttenhower.sph.harvard.edu - Lateral gene transfer (LGT) is an important mechanism for genome diversification in microbial communities, including the human microbiome. While methods exist to identify LGTs from sequenced isolate genomes, identifying LGTs from community...biostarhandbook
By Neel 1654 days agowww.biostarhandbook.com - Nice book collection for bioinformatician ... highly recommended.Applying MinHash to cluster RNAseq samples
By Neel 1654 days agoivory.idyll.org - A kmer blog worth spending time onk-mers tutorial - classification and taxonomy
By Neel 1654 days agoivory.idyll.org - DNA k-mers underlie much of our assembly work, and we (along with many others!) have spent a lot of time thinking about how to store k-mer graphs efficiently, discard redundant data, and count them efficiently. More recently, we've...QuasR: Quantification and annotation of short reads in R
By Neel 1667 days agowww.bioconductor.org - The QuasR package (short for Quantify and annotate short reads in R) integrates the functionality of several R packages (such as IRanges (Lawrence et al. 2013) and Rsamtools) and external software (e.g. bowtie, through the Rbowtie package, and...
