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The Wire
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Jit
@jit.aber
Thread
By
Jit
2171 days ago
Machine learning
https:/
/
www.r-bloggers.com/
explaining-black-box-machine-learning-models-code-part-1-tabular-data-caret-iml/
amp/
#machinelearning
#machine
Neel
@neelam
Thread
By
Neel
2171 days ago
https:/
/
gatkforums.broadinstitute.org/
gatk/
discussion/
1268/
what-is-a-vcf-and-how-should-i-interpret-it
#VCF
#vcf
#SNP
Hardeep Kaur
@hardeep
Thread
By
Hardeep Kaur
2171 days ago
sort -k2 -n genome.fa
#Sort
#Column2
#Bash
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2177 days ago
Useful
#tools
for
#genome
analysis
https:/
/
gigascience.biomedcentral.com/
articles/
10.1186/
s13742-015-0077-2
Jit
@jit.aber
Thread
By
Jit
2178 days ago
#Install
#BioPython
$ python2.7 -m pip install biopython $ python3.6 -m pip install biopython $ pypy -m pip install biopython
Jit
@jit.aber
Thread
By
Jit
2178 days ago
http:/
/
qb.cshl.edu/
assemblytics/
#Analysis
#Genome
#Mummer
#Assembly
#Assemblytics
Jit
@jit.aber
Thread
By
Jit
2181 days ago
https:/
/
www.r-bloggers.com/
a-comparative-review-of-the-r-commander-gui-for-r/
amp/
#R
#GUI
Jit
@jit.aber
Thread
By
Jit
2182 days ago
Replace lowercase to N. perl -pe '/^[^>]/ and $_=~ s/[a-z]/N/g' genomic.fna > genomic.N-masked.fna
#Mask
#Lowecase2N
#LowerCase
Jit
@jit.aber
Thread
By
Jit
2182 days ago
Unmask lowercase. perl -pe '/^[^>]/ and $_=uc' genomic.fna > genomic.unmasked.fna
#LowerCase
#Unmask
Jit
@jit.aber
Thread
By
Jit
2182 days ago
http:/
/
education.knoweng.org/
sequenceng/
#learn
#ngs
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2188 days ago
Transcriptome assembly
https:/
/
www.rna-seqblog.com/
tag/
transcriptome-assembly/
#RNA
-seq
#Transcriptome
#Assembly
Jit
@jit.aber
Thread
By
Jit
2189 days ago
Call for applications : Early Career
#Fellowships
in
#Biomedical
#Research
https:/
/
www.indiaalliance.org/
news/
239
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2194 days ago
Get unique ids from column 1 in Linux. $ cat output_file | cut -f 1 | sort | uniq > allUniqOUT
#Unique
#Linux
#Cut
Jit
@jit.aber
Thread
By
Jit
2194 days ago
#tBLASTn
#command
line $ tblastn -query Avaga.pep.out.45.fa -db myDB -outfmt 6 -out output_file -evalue 1e-5 -max_target_seqs 1
#Blast
#Protein
Jit
@jit.aber
Thread
By
Jit
2194 days ago
perl -e '$/="\n>"; while (<>) { s/>//g; my ($id, $seq) = split /\n/; print ">$_" if length $seq; }' < all_p_ctg.fasta > all_p_ctg_corrected.fasta
#Convert
#Fasta
#Zero
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