Rahul Agarwal
I'm a Bioinformatician and Programmer
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Powerful books for learning data analysis with R
By LEGE 860 days agohttps://r-graphics.org/ - R is powerful tool for data analysis, visualization, and machine learning. And it costs $0 to use! Here are six FREE books you can use to learn R...ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
By Jit 3150 days agohttp://etetoolkit.org - ETE v3, featuring numerous improvements in the underlying library of methods, and providing a novel set of standalone tools to perform common tasks in comparative genomics and phylogenetics. The new features include (i) building gene-based and...lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data
By BioJoker 2869 days agogithub.com - lordFAST is a sensitive tool for mapping long reads with high error rates. lordFAST is specially designed for aligning reads from PacBio sequencing technology but provides the user the ability to change alignment parameters depending on the reads...Genome in a Bottle (GIAB) Consortium
By Jit 2444 days ago Comments (3)jimb.stanford.edu - The Genome in a Bottle (GIAB) Consortium is a public-private-academic consortium hosted by NIST to develop the technical infrastructure (reference standards, reference methods, and reference data) to enable translation of whole human genome...AutoGluon: AutoML for Text, Image, and Tabular Data
By Jit 2097 days agogithub.com - AutoGluon automates machine learning tasks enabling you to easily achieve strong predictive performance in your applications. With just a few lines of code, you can train and deploy high-accuracy machine learning and deep learning models on text,...NASA Open Science Data Repository
By Abhi 655 days agowww.nasa.gov - The NASA Open Science Data Repository (OSDR) enables access to space-related data from experiments and missions that investigate biological and health responses of terrestrial life to spaceflight. The goal of OSDR is to enable multi-modal and...Next Generation Sequencing (NGS) Tutorials
By Jitendra Narayan 4790 days ago Comments (31)chagall.med.cornell.edu - Institute of computational biomedicine, Cornell University provide an NGS workshop tutorial at http://chagall.med.cornell.edu/NGScourse/ You can also add your favourite NGS educational material, or workshop tutorial by commenting on this...Scaffolding of a bacterial genome using MinION nanopore sequencing
By Rahul Agarwal 4107 days agowww.nature.com - Second generation sequencing has revolutionized genomic studies. However, most genomes contain repeated DNA elements that are longer than the read lengths achievable with typical sequencers, so the genomic order of several generated contigs cannot...GAM-NGS: genomic assemblies merger for next generation sequencing
By Jit 3426 days agogithub.com - GAM-NGS is a tool able to merge two or more assemblies in order to improve contiguity and correctness. It can be used on all NGS-based assembly projects and it shows its full potential with multi-library Illumina-based projects. With more than 20...JRF/SRF at University of Hyderabad
Applications are invited for the following post of Junior Research Fellow (temporary position coterminous with the project) under DBT funded research project on ““Understanding the functions of α1β1γ1/α2β1γ1 selective AMPK Modulators in dissecting...
