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NGS quality control and trimming are essential steps to ensure reliable and accurate data for analysis. While the "ifs" highlight the clear benefits of these steps, the "buts" remind us of the potential pitfalls. By adopting best practices and...

github.com - VariantBam is a tool to extract/count specific sets of sequencing reads from next-generational sequencing files. To save money, disk space and I/O, one may not want to store an entire BAM on disk. In many cases, it would be more efficient to store...

github.com - jackalope simply and efficiently simulates (i) variants from reference genomes and (ii) reads from both Illumina and Pacific Biosciences (PacBio) platforms. It can either read reference genomes from FASTA files or simulate new ones. Genomic variants...

console.cloud.google.com - List of publically available databases on google server. More at https://software.broadinstitute.org/gatk/download/bundle ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/VCF/GATK/. ftp://ftp.broadinstitute.org/bundle/hg38/hg38bundle/

Applications are invited for the post of Research Associate (RA) in the ICAR project on "Lactation stress associated postpartum anestrus SNP array in buffaloes". We are looking for a motivated candidate for handling Next Generation sequencing data...

Perl GD module installation in various operating systems

www.citrusperl.com - Citrus Perl is a binary distribution of Perl created for GUI application developers. The distribution includes wxPerl, the Perl wrapper for wxWidgets. Where supported by the operating system wxWidgets is available as a package for the 2.8.x stable...

This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl

Advertisement No. : R&C/CD/427/2015 ,Vacancy Code: 4271501 Project Fellow Bioinformatics recruitment in Indian Institute of Chemical Biology (IICB) purely temporary Name of the Project: "Genomics and Informatics Solutions for...

search.cpan.org - BioPerl modules Bio::Graphics + Bio::DB:GFF and example scripts. It can draw some of the (but not all) feature types GBrowse can draw. This script should contain everything you can probably make use of (e.g. transcripts,...