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Master Thesis: Trans-membrane topology prediction through Markov based decoders
By Rahul Agarwal 4148 days agoAbstract: Background/Motivation: The dearth of structural information on alpha helical membrane protein (MPs) has hindered thus far the development of reliable knowledge –based potentials that can be used for automatic prediction of...eQuant : energy-based quality assessment of protein
By Shruti Paniwala 2709 days agobiosciences.hs-mittweida.de - Protein structures are of varying quality. Especially, in-silico modeled structures are prone to contain serious errors, which limit the usefulness and reliability of these particular protein structures.eQuant is a service for structure...STRUM: structure-based prediction of protein stability changes upon single-point mutation
By BioStar 2267 days agozhanglab.ccmb.med.umich.edu - STRUM is a method for predicting the fold stability change (ΔΔG) of protein molecules upon single-point nsSNP mutations. STRUM adopts a gradient boosting regression approch to train the Gibbs free-energy changes on a variety of features...PhD student / Bio-informatician in computational protein modeling
PhD student / Bio-informatician in computational protein modeling Job Profile You will perform research on drug/protein interaction analysis in the context of lung cancer, using computational protein modeling. You will implement existing models...Basics of BLAST Programs !
By BioStar 121 days agoThe Basic Local Alignment Search Tool (BLAST) is a powerful bioinformatics program used to compare an input sequence (such as DNA, RNA, or protein sequences) against a database of sequences to find regions of similarity.
List of In-silico Binding Site Prediction Tools
Last updated 3947 days ago by Shikha LogwaniFollowing are the list of In-silico Binding Site Prediction in Proteins tools CASTp : http://sts.bioengr.uic.edu/castp/ Computed Atlas of Surface Topography of proteins (CASTp) provides an online resource for locating, delineating and...JPred4: A Protein Secondary Structure Prediction Server
By Poonam Mahapatra 2522 days agowww.compbio.dundee.ac.uk - JPred4 (http://www.compbio.dundee.ac.uk/jpred4) is the latest version of the popular JPred protein secondary structure prediction server which provides predictions by the JNet algorithm, one of the most accurate methods for secondary structure...-
Tools for Protein-Protein Docking !
Last updated 2405 days ago by Poonam MahapatraPredicting the structure of protein–protein complexes using docking approaches is a difficult problem whose major challenges include identifying correct solutions, and properly dealing with molecular flexibility and conformational changes.... Live Webinar on RNA-Seq Data Analysis on 9 Nov 2016
By Strand 2958 days agoLive Webinar on RNA-Seq Data Analysis Abstract: Strand NGS supports an extensive workflow for the analysis and visualization of RNA-Seq data. The workflow includes Transcriptome / Genome alignment, Differential expression analysis with Statistical...-
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Last updated 2467 days ago by StrandStrand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze their data using a very intuitive workflow for the analysis and visualization of RNA-Seq data. This webinar will give an overview of the workflow which includes...
