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XAMPP: Starting Apache fail Ubuntu
By Ram Yash Pal 3825 days ago Comments (1)Just press Ctrl+Alt+T on your keyboard to open Terminal. When it opens, run the command(s) below:
My commonly used commands in Bioinformatics
Last updated 2315 days ago by Rahul NayakFYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluate them individually: minimap -t 24 assembly.fasta long_reads.fastq.gz | racon -t 24 long_reads.fastq.gz - assembly.fasta...Referee: Genome assembly quality scores
By Jit 2213 days agogwct.github.io - Modern genome sequencing technologies provide a succint measure of quality at each position in every read, however all of this information is lost in the assembly process. Referee summarizes the quality information from the reads that map to a site...jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator
By Abhimanyu Singh 1950 days agogithub.com - jackalope simply and efficiently simulates (i) variants from reference genomes and (ii) reads from both Illumina and Pacific Biosciences (PacBio) platforms. It can either read reference genomes from FASTA files or simulate new ones. Genomic variants...The 8000 years old Tibetian gene mutation !!!
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By Jit 1764 days agogithub.com - Welcome to kevlar, software for predicting de novo genetic variants without mapping reads to a reference genome! kevlar's k-mer abundance based method calls single nucleotide variants (SNVs), multinucleotide variants (MNVs),...-
Phylogenetic for Bioinformatics
Last updated 4151 days ago by Jitendra Narayan Comments (2)Biologists estimate that there are about 5 to 100 million species of organisms living on Earth today. Evidence from morphological, biochemical, and gene sequence data suggests that all organisms on Earth are genetically related, and the genealogical... Perl and BioPerl Tutorials
By Jitendra Narayan 4108 days ago Comments (27)cbb.sjtu.edu.cn - This bookmark is created to store the useful Perl and BioPerl tutorial links at one place. Feel free to share and add more useful tutorial links here ....-
Single Cell RNAseq data analysis tutorial !!
Last updated 2555 days ago by Robert M WilliomsA major breakthrough (replaced microarrays) in the late 00’s and has been widely used since Measures the average expression level for each gene across a large population of input cells Useful for comparative transcriptomics,...
