Next Generation Sequencing (NGS)
https://en.wikipedia.org/wiki/Sequencing
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Understanding your reads and mapping !
By Neel 1762 days agobioinformatics-core-shared-training.github.io - One of the best tutorial for beginners ... https://bioinformatics-core-shared-training.github.io/cruk-summer-school-2017/Day1/Session4-seqIntro.htmlModular, efficient and constant-memory single-cell RNA-seq preprocessing
By Jit 1330 days ago Comments (1)pachterlab.github.io - With kallisto | bustools you can Generate a cell x gene or cell x transcript equivalence class count matrix Perform RNA velocity and single-nuclei RNA-seq analsis Quantify data from numerous technologies such as...New RNA Seq tool
By Rahul Agarwal 3867 days ago Comments (4)www.genengnews.com - "By removing the time-consuming step of read mapping, the authors reported, Sailfish able to provide quantification estimates 20–30 times faster than current methods without loss of accuracy." Tool...Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
By Yeshodari 2590 days agowww.strand-ngs.com - Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017 ORLANDO, USA, Oct 17, 2017/ PRNewswire/ Strand NGS now supports large scale RNA- and small-RNA-Seq and Unique Molecular Identifiers (UMIs) for DNA-, RNA-, and...StringTie Transcript assembly and quantification for RNA-Seq
By Jit 1630 days agoccb.jhu.edu - StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional de novo assembly step to assemble and quantitate full-length...dupRadar package
By Jit 2486 days agobioconductor.org - The dupRadar package gives an insight into the duplication problem by graphically relating the gene expression level and the duplication rate present on it. Thus, failed experiments can be easily identified at a glance
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Last updated 1054 days ago by AbhiHorizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-celled eukaryotes, but a number of factors combine to make it far rarer in...-
Ligand Docking Tools and Software !
Last updated 2406 days ago by Poonam MahapatraLigand docking referred to cases where small molecule (“ligand”) is being docked into much larger macromolecule ("target"). The following is partial list of docking software, focusing on free (at least for academic institutes) and/or... EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
By Rahul Nayak 2393 days agoarthropods.eugenes.org - EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct high quality, accurate gene sets for animals and plants, developed by Don Gilbert at Indiana University,...List of comparative genomics resources !
By Shruti Paniwala 881 days agoComparative genomics links !
