Our Sponsors
Related items
NCBI Magic-BLAST
By Jit 2423 days agoncbi.github.io - Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of...LncPipe:A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq...
By LEGE 1293 days agogithub.com - The pipeline was developed based on a popular workflow framework Nextflow, composed of four core procedures including reads alignment, assembly, identification and quantification. It contains various unique features such as well-designed...deepTools
By Martin Jones 3798 days agoUser-friendly tools for the normalization and visualization of deep-sequencing dataStringTie Transcript assembly and quantification for RNA-Seq
By Jit 1758 days agoccb.jhu.edu - StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional de novo assembly step to assemble and quantitate full-length...Understanding RNA-Seq Normalization Methods: TPM vs. FPKM vs. CPM
By Neel 112 days agoChoosing the right normalization method depends on the specific objectives of your RNA-Seq analysis. TPM’s proportionality and robustness make it the preferred choice for most applications, while CPM serves well for differential expression...Webinar on Streamlining large scale analysis using the Strand NGS Pipeline Manager on 24 Feb 2016
By Yeshodari 3344 days agoLive Webinar on Streamlining large scale NGS data analysis using the Strand NGS Pipeline Manager on 24 Feb 2016 Abstract: Strand NGS includes comprehensive workflows for DNA-Seq, RNA-Seq, Small RNA-Seq, ChIP-Seq, MeDIP-Seq, and Methyl-Seq analysis....Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna...
By Strand 2571 days ago Comments (2)A disease is considered to be ‘rare’ when it affects one in about 2000 individuals in the population. This, individually are although rare, collectively, the incidence could be very high causing a significant socio-economic burden....RNA-Seq Data Pathway and Gene-set Analysis Workflows
By Jit 4177 days agoDescribe the GAGE workflows on RNA-Seq data pathway analysis and gene-set analysis.Scallop: reference-based transcriptome assembler for RNA-seq
By Rahul Nayak 2521 days agogithub.com - Scallop is an accurate reference-based transcript assembler. Scallop features its high accuracy in assembling multi-exon transcripts as well as lowly expressed transcripts. Scallop achieves this improvement through a novel algorithm that can be...BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
By Rahul Nayak 1564 days agoamp.pharm.mssm.edu - With BioJupies you can produce in seconds a customized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple user interface BioJupies now supports user accounts! Sign in from the top right corner of the page...
