Jit
Enthusiast computational biologist with business dream !!!
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BUSCO
By Jitendra Narayan 3894 days agohttp://busco.ezlab.org/ - Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs More at http://busco.ezlab.org/fragScaff: Genome Assembly with Contiguity Preserving Transposition
By Jit 3067 days agosourceforge.net - Contiguity preserving transposition and sequencing (CPT-seq) is an entirely in vitro means of generating libraries comprised of 9216 indexed pools, each of which contains thousands of sparsely sequenced long fragments ranging from 5 kilobases to...Bioinformatics definitions and applications !!!
By Jit 4772 days ago Comments (2)There have been long discussion amongst several specialized/expert educator regarding bioinformatics arena, but everyone explain bioinformatics with their own view. I tried to explain it with a cartoon. Hope you all will like it.
Is reference genome necessary for gene expression study in transcriptome sequencing or for variant discovery in genome sequencing?
Rahul Agarwal 4829 days agoAirLift, a methodology and tool for comprehensively moving mappings and annotations from one genome...
By Jit 2479 days agogithub.com - We propose AirLift, a methodology and tool for comprehensively moving mappings and annotations from one genome to another similar genome while maintaining the accuracy of a full mapper.RATT
By Jitendra Narayan 3894 days agoratt.sourceforge.net - RATT is software to transfer annotation from a reference (annotated) genome to an unannotated query genome. It was first developed to transfer annotations between different genome assembly versions. However, it can also transfer annotations between...SRF Bioinformatics job position in National Institute of Plant Genome Research (NIPGR)
SRF Bioinformatics job position in National Institute of Plant Genome Research (NIPGR) Title : “Transcriptome and small RNA diversity analysis of developing seed contrasting rice varieties” Qualification : Candidates having M.Sc./M.Tech. degree...Bioinformatician kidnaped !!!
By Rahul Nayak 4737 days agoSome fish kidnaped a bioinformatician for their genome analysis.methylKit
By Jit 3777 days agogithub.com - methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods such as Agilent...ENCODE3: A collection of research articles and related content describing the Encyclopedia of DNA...
By Shruti Paniwala 2250 days agoENCODE 3 A collection of research articles and related content describing the Encyclopedia of DNA Elements, its datasets and tools.
