Jit
Enthusiast computational biologist with business dream !!!
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mScaffolder: A comparative genome scaffolding tool
By Jit 2974 days agogithub.com - A comparative genome scaffolding tool based on MUMmer mScaffolder scaffolds a genome using an existing high quality genome as the reference. It aligns the two genomes using nucmer utility from MUMmer and then orders and orients the contigs of the...RATT
By Jitendra Narayan 3832 days agoratt.sourceforge.net - RATT is software to transfer annotation from a reference (annotated) genome to an unannotated query genome. It was first developed to transfer annotations between different genome assembly versions. However, it can also transfer annotations between...SRF Bioinformatics job position in National Institute of Plant Genome Research (NIPGR)
SRF Bioinformatics job position in National Institute of Plant Genome Research (NIPGR) Title : “Transcriptome and small RNA diversity analysis of developing seed contrasting rice varieties” Qualification : Candidates having M.Sc./M.Tech. degree...India and Germany to begin joint research in the area of 'Bioinformatics in Health Research'
By Rahul Nayak 3122 days agoTo facilitate bilateral cooperation in biotechnology between the scientific communities of India and Germany, the Department of Biotechnology (DBT) will soon begin collaborative research in the identified priority area of 'Bioinformatics in Health...Bioinformatics definitions and applications !!!
By Jit 4711 days ago Comments (2)There have been long discussion amongst several specialized/expert educator regarding bioinformatics arena, but everyone explain bioinformatics with their own view. I tried to explain it with a cartoon. Hope you all will like it.
Is reference genome necessary for gene expression study in transcriptome sequencing or for variant discovery in genome sequencing?
Rahul Agarwal 4767 days agoCoronavirus Resources !
By Neel 2324 days ago Comments (15)bigd.big.ac.cn - 2019nCoVR features comprehensive integration of genomic and proteomic sequences as well as their metadata information from the GISAID, NCBI, NMDC and CNCB/NGDC. It also incorporates a wide range of relevant information including scientific...DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
By Jit 3187 days agohttps://dfast.nig.ac.jp/ - We developed a prokaryotic genome annotation pipeline, DFAST, that also supports genome submission to public sequence databases. DFAST was originally started as an on-line annotation server, and to date, over 7,000 jobs have been processed since its...Genome U-Plot: a whole genome visualization
By Rahul Nayak 2945 days agogithub.com - Genome U-Plot for producing clear and intuitive graphs that allows researchers to generate novel insights and hypotheses by visualizing SVs such as deletions, amplifications, and chromoanagenesis events. The main features of the Genome U-Plot are...
