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SLR-superscaffolder: A scaffold assemble pipeline for stLFR reads.
By Jit 1774 days agogithub.com - This is a scaffold assembler designed for stLFR reads[1]. It uses the link-reads information from stLFR reads to assemble contigs to scaffolds. Here is an illustration of this pipeline:PyParanoid: a pipeline for rapid identification of homologous gene families in a set of genomes
By BioStar 1593 days agogithub.com - PyParanoid is a pipeline for rapid identification of homologous gene families in a set of genomes - a central task of any comparative genomics analysis. The "gold standard" for identifying homologs is to use reciprocal best hits (RBHs) which depends...AlignGraph2: similar genome-assisted reassembly pipeline for PacBio long reads
By Rahul Nayak 1380 days agogithub.com - AlignGraph2 is the second version of AlignGraph for PacBio long reads. It extends and refines contigs assembled from the long reads with a published genome similar to the sequencing genome. More...Illumina based assembly pipeline steps !
By Surabhi Chaudhary 1109 days agoGenome assembly pipeline !Bactopia: a flexible pipeline for complete analysis of bacterial genomes
By Abhi 198 days agobactopia.github.io - Bactopia is a flexible pipeline for complete analysis of bacterial genomes. The goal of Bactopia is process your data with a broad set of tools, so that you can get to the fun part of analyses quicker! Bactopia was inspired by Staphopia, a...Integrated mRNA and microRNA transcriptome analysis in Strand NGS
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By Yeshodari 2715 days agoTranscriptome analysisWebinar on Fast and Accurate DNA Variant Calling on 26 Apr 2017
By Yeshodari 2803 days agoContinuing our DNA-Seq webinar series, we'll present Strand NGS v3.0 best-practices: a workflow that identifies highly accurate variants from raw reads. Our best practices workflow is twice as fast as its GATK counterpart, and results in...Webinar on Implications of Next Generation Sequencing in Molecular Diagnosis of Cancer on 28 Sep...
By Strand 3035 days agoLive webinar on Implications of NGS in molecular diagnosis of cancerDrawback of Exome Sequencing
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