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Research Assistant @ University of Hyderabad
University of Hyderabad Repository for Tomato Genomic Resources Department of Plant Sciences Bioinformatics Position in Tomato Functional Genomics At the Repository for Tomato Genomics Resources, we are working on Tomato Functional Genomics,...PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
By Jit 2550 days agohttps://plast.inria.fr/ - PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations of seeds-based heuristic comparison methods, such as the Blast suite of algorithms. Relying on unique software architecture,...BOKU Lab
We are interested in the study of complex systems in living organisms. Novel views augmenting the classical gene by gene approaches are required to overcome the engineered redundancies and combinatorial effects prevalent in higher eukaryotes. We...pbalign: maps PacBio reads to reference sequences and saves alignments to a BAM file
By Jit 2376 days agogithub.com - pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. The output Compare HDF5 file...Postdoctoral Position (Bioinformatics/Computational Biology)
University College Cork LAPTI Cork-Co Cork-Ireland Postdoctoral position is available for three years to work on development of Bioinformatics resources for the analysis and visualization of ribosome profiling data. Ribosome profiling...Installing Salmon for Trinity !
By Rahul Nayak 2336 days ago Comments (1)Installing Trinity dependencies !Critical to discoveries in bioinformatics
By Surajeet 3996 days agoEMBL-EBI distributes datasets worldwide using the Janet network. This biological data enables the discovery of new drugs, new diagnostics and increasingly new agro-chemicals. Their work, which includes the 1000-genome project, has generated...nanofilt: Filtering and trimming of long read sequencing data
By Jit 2309 days ago Comments (1)github.com - Filtering on quality and/or read length, and optional trimming after passing filters.Reads from stdin, writes to stdout. Intended to be used: directly after fastq extraction prior to mapping in a stream between extraction and...Research Associate @ INDIAN INSTITUTE OF SPICES RESEARCH
INDIAN INSTITUTE OF SPICES RESEARCH (Indian Council of Agricultural Research) Marikunnu P.O., Kozhikode – 673 012, Kerala WALK -IN- TEST CUM INTERVIEW Walk- in- Test cum Interview (based on test) for the selection of Research Associate...nQuire: a statistical framework for ploidy estimation using next generation sequencing
By Jit 2243 days agogithub.com - nQuire provides a statistical framework to study organisms with intraspecific variation in ploidy. nQuire is likely to be useful in epidemiological studies of pathogens, artificial selection experiments, and for historical or ancient samples where...
