Jitendra Prajapati
A Bioinformatician
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HapSolo: An optimization approach for removing secondary haplotigs during diploid genome assembly...
By Jit 1960 days agogithub.com - Despite marked recent improvements in long-read sequencing technology, the assembly of diploid genomes remains a difficult task. A major obstacle is distinguishing between alternative contigs that represent highly heterozygous regions. If primary...Comparative genomics educational material and papers bookmarks
By Jit 3407 days ago Comments (5)www.nature.com - Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blocks (HSBs). Using porcine HSBs and stringent filtering criteria, 192 pig-specific evolutionary breakpoint regions...HapSolo: An optimization approach for removing secondary haplotigs during diploid genome assembly...
By Jit 1766 days agogithub.com - HapSolo, that identifies secondary contigs and defines a primary assembly based on multiple pairwise contig alignment metrics. HapSolo evaluates candidate primary assemblies using BUSCO scores and then distinguishes among candidate assemblies using...RA Bioinformatics at NATIONAL INSTITUTE OF CANCER PREVENTION & RESEARCH (ICMR)
NATIONAL INSTITUTE OF CANCER PREVENTION & RESEARCH (ICMR) Noida 201301 (U.P) Applications are invited upto 21.11.2016 from interested candidates as per details available on NICPR website (www.nicpr.res.in)/ ICMR website (www.icmr.nic.in)...Illumina based assembly pipeline steps !
By Surabhi Chaudhary 1550 days agoGenome assembly pipeline !Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation
By Neel 1436 days agogithub.com - Merfin, a k-mer based variant-filtering algorithm for improved accuracy in genotyping and genome assembly polishing. Merfin evaluates each variant based on the expected k-mer multiplicity in the reads, independently of the quality of the...EXCAVATOR2tool
By Bulbul 3386 days agosourceforge.net - EXCAVATOR2 is a collection of bash, R and Fortran scripts and codes that analyses Whole Exome Sequencing (WES) data to identify CNVs. EXCAVATOR2 enhances the identification of all genomic CNVs, both overlapping and non-overlapping targeted exons by...MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads
By Abhi 916 days agogithub.com - MitoHiFi v3.2 is a python pipeline distributed under MIT License ! MitoHiFi was first developed to assemble the mitogenomes for a wide range of species in the Darwin Tree of Life Project...DBT India
By Jit 3382 days agowww.dbtindia.nic.in - Latest announcement on DBT India. Calls Events Projects JobsTRITEX, a computational pipeline for chromosome-scale assembly of plant genomes
By LEGE 388 days agotritexassembly.bitbucket.io - This is the documentation of TRITEX, a computational pipeline for chromosome-scale assembly of plant genomes. It was developed in the research group Domestication Genomics at the Leibniz Institute of Plant Genetics and Crop Research (IPK)...
