Jitendra Prajapati
A Bioinformatician
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Trimmomatic: A flexible read trimming tool for Illumina NGS data
By Jit 3145 days agowww.usadellab.org - Paired End: java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz output_forward_paired.fq.gz output_forward_unpaired.fq.gz output_reverse_paired.fq.gz output_reverse_unpaired.fq.gz ILLUMINACLIP:TruSeq3-PE.fa:2:30:10...Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
By Jit 3134 days agobioinformatics.ua.pt - Smash is a completely alignment-free method/tool to find and visualise genomic rearrangements. The detection is based on conditional exclusive compression, namely using a FCM (Markov model), of high context order (typically 20). For...segemehl
By Anjana 3120 days agohoffmann.bioinf.uni-leipzig.de - segemehl is a software to map short sequencer reads to reference genomes. Unlike other methods, segemehl is able to detect not only mismatches but also insertions and deletions. Furthermore, segemehl is not limited to a specific read length and is...AccNET
By Jitendra Narayan 2970 days agosourceforge.net - AccNET is a Perl application that presents a new way to study the accessory genome of a given set of organisms. Using the proteomes of these organisms, AccNET create a bipartite network compatible with common network analysis platforms. AccNET...Bioinformatics Tutor at PGIMER
Postgraduate Institute of Medical Education and Research (PGIMER) - Chandigarh, Chandigarh ₹9,300 - ₹34,800 a month Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh invites Online Applications for recruitment of...Summer internship positions at DuPont
DuPont Industrial Biosciences has several summer internship positions for undergrads available. We are looking for driven and creative interns to conduct research in the following areas: · Enzyme immobilization supports for select enzyme...
SLURM basics !
Last updated 3117 days ago by Radha Agarkar Comments (1)SLURM is a queue management system and stands for Simple Linux Utility for Resource Management. SLURM was developed at the Lawrence Livermore National Lab and currently runs some of the largest compute clusters in the world. SLURM is similar in...MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
By Neel 3110 days agojournals.plos.org - MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK can align reads generated by all the major sequencing technologies,...Senior Project Fellow Bioinformatics at NBRI
Walk In Interview No. 03/Project/2016 Senior Project Fellow Bioinformatics Job vacancies in CSIR- National Botanical Research Institute (NBRI), Lucknow Area III: Molecular Biology & Biotechnology Qualification : 1st Class M.Sc. in...
