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Tetra-Nucleotide Analysis
By Jit 2763 days agochunlab.wordpress.com - A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC or TTGG). Pride et al. (2003) showed that the frequency of tetra-nucleotides in bacterial genomes contain useful, albeit weak, phylogenetic signals. Even though...Assembly Course
By Shruti Paniwala 2696 days agoocw.mit.edu - https://ocw.mit.edu/courses/biology/7-91j-foundations-of-computational-and-systems-biology-spring-2014/lecture-slides/MIT7_91JS14_Lecture6.pdfTen International Scholarships for Indian Biotechnology and Bioinformatics Students
By Priya Singh 2757 days ago Comments (10)10 International Scholarships for Indian StudentsRectangle Graph for Repeat Resolution in Genome Assembly
By Rahul Nayak 2525 days agobioinf.spbau.ru - Ultimate tool for resolving repeats in genome assemblies. Though the specific implementation of the idea of the rectangle graph approach is already included into the current SPAdes distribution, we're also releasing the Rectangle Graph Module...ERGO 2.0 Bioinformatics suites
By Jit 2751 days agowww.igenbio.com - ERGO 2.0 provides a systems biology informatics toolkit centered on comparative genomics to capture, query, and visualize sequenced genomes. Using Igenbio's proprietary algorithms, and the most comprehensive genomic database integrated with...The MARVEL assembler
By Jit 2397 days agogithub.com - MARVEL consists of a set of tools that facilitate the overlapping, patching, correction and assembly of noisy (not so noisy ones as well) long reads. The assembly process can be summarized as follows: overlap patch reads overlap...Senior Bioinformatics Software Developer, Hyderabad, Telangana
DuPont Pioneer is the world leader in plant biotechnology area including discovery, development and delivery of elite crop genetics. DuPont Pioneer is aggressively building Big Data and Predictive Analytics capabilities in order to deliver improved...The 10th North East Bioinformatics Network (NEBINet) Annual Coordinators' Meet
By Jit 2565 days agoThe 10th North East Bioinformatics Network (NEBINet) Annual Coordinators' Meet organised by the Bioinformatics Centre, St Edmund's College, Shillong and sponsored by the Department of Biotechnology, Government of India, was held at St Edmund's...BEAP: Blast Extension and Assembly Program
By Shruti Paniwala 2360 days agowww.animalgenome.org - The Blast Extension and Assembly Program (BEAP) is a computer program that uses a short starting DNA fragment, often a EST or partial gene segment, as "primer", to recursively blast nucleotide databases in an attempt to obtain all sequences that...Bioinformatics tools developed for Oxford Nanopore data analysis !
By biogeek 2525 days ago Comments (2)One of the technical advantages of ONT data is the read length, which offers great prospects for genome assembly.
