Jit
Enthusiast computational biologist with business dream !!!
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Finishing !!
By Jit 2791 days agowww.cbcb.umd.edu - The process of finishing a genome and moving it from a draft stage (the result of sequencing and initial assembly) to a complete genome is typically a time and resource intensive task. The advent of new sequencing technologies...BOKU Lab
We are interested in the study of complex systems in living organisms. Novel views augmenting the classical gene by gene approaches are required to overcome the engineered redundancies and combinatorial effects prevalent in higher eukaryotes. We...PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
By Jit 2596 days agohttps://plast.inria.fr/ - PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations of seeds-based heuristic comparison methods, such as the Blast suite of algorithms. Relying on unique software architecture,...Postdoctoral Position (Bioinformatics/Computational Biology)
University College Cork LAPTI Cork-Co Cork-Ireland Postdoctoral position is available for three years to work on development of Bioinformatics resources for the analysis and visualization of ribosome profiling data. Ribosome profiling...pbalign: maps PacBio reads to reference sequences and saves alignments to a BAM file
By Jit 2422 days agogithub.com - pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. The output Compare HDF5 file...Critical to discoveries in bioinformatics
By Surajeet 4042 days agoEMBL-EBI distributes datasets worldwide using the Janet network. This biological data enables the discovery of new drugs, new diagnostics and increasingly new agro-chemicals. Their work, which includes the 1000-genome project, has generated...Installing Salmon for Trinity !
By Rahul Nayak 2382 days ago Comments (1)Installing Trinity dependencies !Research Associate @ INDIAN INSTITUTE OF SPICES RESEARCH
INDIAN INSTITUTE OF SPICES RESEARCH (Indian Council of Agricultural Research) Marikunnu P.O., Kozhikode – 673 012, Kerala WALK -IN- TEST CUM INTERVIEW Walk- in- Test cum Interview (based on test) for the selection of Research Associate...nanofilt: Filtering and trimming of long read sequencing data
By Jit 2355 days ago Comments (1)github.com - Filtering on quality and/or read length, and optional trimming after passing filters.Reads from stdin, writes to stdout. Intended to be used: directly after fastq extraction prior to mapping in a stream between extraction and...nQuire: a statistical framework for ploidy estimation using next generation sequencing
By Jit 2289 days agogithub.com - nQuire provides a statistical framework to study organisms with intraspecific variation in ploidy. nQuire is likely to be useful in epidemiological studies of pathogens, artificial selection experiments, and for historical or ancient samples where...
