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List of bioinformatics packages for NGS analysis !
By Rahul Nayak 1903 days agoPackage suites gather software packages and installation tools for specific languages or platforms. We have some for bioinformatics software.UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
By BioStar 2684 days agogithub.com - UpSetR generates static UpSet plots. The UpSet technique visualizes set intersections in a matrix layout and introduces aggregates based on groupings and queries. The matrix layout enables the effective representation of associated data,...R Package for PCA Analysis
By LEGE 802 days agorpubs.com - An R package for performing principal component analysis (PCA) of genomics data. The package performs PCA, generates the publication-ready plots, and identifies population-specific outlier individuals. The package can be accessed on...chromoMap-An R package for Interactive visualization and mapping of human chromosomes
By Rahul Nayak 2902 days ago Comments (1)An R package for Interactive visualization and mapping of human chromosomesGeneOverlap: An R package to test and visualize gene overlaps
By Jit 2716 days agobioconductor.org - Overlapping gene lists can reveal biological meanings and may lead to novel hypotheses. For example, histone modification is an important cellular mechanism that can pack and re-pack chromatin. By making the chromatin structure more dense or loose,...GeneMates: an R package for Detecting Horizontal Gene Co-transfer between Bacteria Using Gene-gene...
By Rahul Nayak 2281 days agogithub.com - GeneMates is an R package implementing a network approach to identify horizontal gene co-transfer (HGcoT) between bacteria using whole-genome sequencing (WGS) data. It is particularly useful for investigating intra-species HGcoT, where...ReConPlot: an R package for the visualization and interpretation of genomic rearrangements
By LEGE 904 days agoacademic.oup.com - ReConPlot (REarrangement and COpy Number PLOT), an R package that provides functionalities for the joint visualization of SCNAs and SVs across one or multiple chromosomes. ReConPlot is based on the popular ggplot2 package, thus allowing...Pimp your brain: Bioinformatics
By Neel 4306 days agoJan Lisec from the Max Planck Institute of Molecular Plant Physiology explains, in this "pimp your brain" episode, what bioinformatics is and why bioinformatics is so important and indispensable for biological research. In the video serial "Pimp...SRF/JRF Bioinformatics at CIARI
Realizing the importance of Island Agriculture to meet the requirements of local population and tourists, Indian Council of Agricultural research (ICAR) established Central Island Agricultural Research Institute, Port Blair on June 23rd, 1978 by...
