Radha Agarkar
A Bioinformatician
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Mapping NGS
By Abhimanyu Singh 3454 days agowiki.bits.vib.be - NGS data are just a bunch of sequences, you have no idea which region in the genome each sequences comes from, which gene it represents...To know that you have to align the sequences to the reference sequence. The reference sequence is in most cases...List of popular bioinformatics software/tools
By Jitendra Narayan 4840 days ago Comments (28)samtools.sourceforge.net - In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.CLA: Contig-Layout-Authenticator
By Jit 3451 days agojournals.plos.org - To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end sequencing, we developed Contig-Layout-Authenticator (CLA). The CLA pipeline can scaffold reference-sorted contigs based on paired reads,...Computational Proteomics : Lets remember the basics
By Jitendra Narayan 4824 days ago Comments (5)Basics of computational proteomicsBienko and Crosetto Labs
We are two groups of scientists doing frontier research in quantitative biology and biomedicine. The Bienko group is interested in exploring the fundamental design principles controlling how DNA is packed in the eukaryotic nucleus and its relation...Life of BI !!!
By Jitendra Narayan 4803 days ago Comments (1)Hmm .. Don't worry you read it right .. this is not pi but bi ... "life of Bioinformatician(BI)". Disclaimer: This cartoon is solely designed to create humour and fun, not to offend any PI, supervisor or student.Salzberg lab
We are a computational biology lab that develops novel methods for analysis of DNA and RNA sequences. Our research includes software for aligning and assembling RNA-seq data, whole-genome assembly, and microbiome analysis. We work closely with...UK Genome Science Meeting, sept 2nd-4th, 2013
By Poonam Mahapatra 4813 days agoUK Genome Science Meeting at Nottingham, UKNCBI Prokaryotic Genome Annotation Pipeline
By Jit 3440 days agowww.ncbi.nlm.nih.gov - NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids). Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional...Personalised Medicine - Animation
By Manshi Raghubanshi 4798 days agoTwo animated case scenarios set now and in the future. These highlight potential differences in the way patients are treated now, and how they might be treated as healthcare becomes more tailored.
