Radha Agarkar
A Bioinformatician
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Assistant Professor at Jawaharlal Nehru University in Delhi
Advt. No. RC/48/2014 SCHOOL OF COMPUTATIONAL AND INTEGRATIVE SCIENCES (SC&IS) ESSENTIAL QUALIFICATION : - M.Sc./M.Tech. in Physics/ Chemistry/ Biology/ Mathematics/ Statistics/ Bioinformatics/ Computational Biology. Ph.D. in the broad...COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
By Jit 2538 days agoftp.genomics.org.cn - An efficient tool called Connecting Overlapped Pair-End (COPE) reads, to connect overlapping pair-end reads using k-mer frequencies. We evaluated our tool on 30× simulated pair-end reads from Arabidopsis thaliana with 1% base error. COPE...Memories Can Be Passed Down Through DNA
By Radha Agarkar 3843 days agoThe premise of Assassin's Creed is the reliving of other people's memories stored inside DNA. Well scientists have found that in mice, it actually happens! Anthony is joined by special guest and our friend Tara Long from Hard Science to explain how...Synima: Synteny Imaging tool
By Jit 2533 days agogithub.com - Synteny Imaging tool (Synima) written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and outputs an overview of genome-wide synteny in PDF. Each of...Bioinformatics JRF/SRF position at NATIONAL RESEARCH CENTRE ON PLANT BIOTECHNOLOGY
NATIONAL RESEARCH CENTRE ON PLANT BIOTECHNOLOGY LBS, CENTRE, PUSA CAMPUS, IARI NEW DELHI NEW DELHI – 110 012 WALK- IN –INTERVIEWS Eligible candidates may appear in Walk-in-Interview on May 23, 2014 at 10 AM for the posts of Research...Multi-CAR: a tool of contig scaffolding using multiple references
By Rahul Nayak 2447 days agogenome.cs.nthu.edu.tw - we design a simple heuristic method to further revise our single reference-based scaffolding tool CAR into a new one called Multi-CAR such that it can utilize multiple complete genomes of related organisms as references to more accurately order and...A History of Bioinformatics (in the Year 2039)
By Martin Jones 3769 days agoC. Titus Brown http://video.open-bio.org/video/1/a-history-of-bioinformatics-in-the-year-2039minialign: fast and accurate alignment tool for PacBio and Nanopore long reads
By Jit 2368 days agogithub.com - Minialign is a little bit fast and moderately accurate nucleotide sequence alignment tool designed for PacBio and Nanopore long reads. It is built on three key algorithms, minimizer-based index of the minimap overlapper, array-based seed chaining,...Scientists map 17,294 proteins produced in human body
By Jit 3825 days ago17,294 proteins mapped in 30 organs of human bodyEAGLER: a scaffolding tool for long reads.
By Jit 2357 days agogithub.com - EAGLER is a scaffolding tool for long reads. The scaffolder takes as input a draft genome created by any NGS assembler and a set of long reads. The long reads are used to extend the contigs present in the NGS draft and possibly join overlapping...
